; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017444 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017444
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold4:34494492..34503928
RNA-Seq ExpressionSpg017444
SyntenySpg017444
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025361.1 uncharacterized protein E6C27_scaffold1204G00450 [Cucumis melo var. makuwa]8.8e-1190Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MSGLH VFNVSVGST IVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]8.8e-1190Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MS LH VFNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-0985Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MS LH VF+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-1179.59Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGVLDMLVKAI
        MSGLH VFNVSVGSTGIVRGDDVC LH VFRAK  GGPGG + M+ KAI
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGVLDMLVKAI
TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]8.8e-1190Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MS LH VFNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein4.3e-1190Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MS LH VFNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
A0A5A7V9N3 Reverse transcriptase8.1e-1085Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MS LH VF+V VGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein8.6e-1279.59Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGVLDMLVKAI
        MSGLH VFNVSVGSTGIVRGDDVC LH VFRAK  GGPGG + M+ KAI
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGVLDMLVKAI
A0A5D3CJX3 CCHC-type domain-containing protein4.3e-1190Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MS LH VFNVSVGSTGIVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
A0A5D3DIE3 Retrotrans_gag domain-containing protein4.3e-1190Show/hide
Query:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
        MSGLH VFNVSVGST IVRGDDVCWLHAVFRAK  GGPGG
Subjt:  MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGGCTGCACCAAGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAACAGGTGG
TCCGGGAGGGGTGCTCGACATGCTGGTCAAGGCGATCAACGCCAAGGAGAAGGGTCTGCCCCACGCATGCACAAAGCAAGAACCGAGAGACCCTCAGAATCCGAGCGGTT
CTCGACACAAGAAGCCCACACCTACCGATTTTCTCCACCAAAGCCAAAAACCCGTGGAAAAACCTCTTAGAAAACGCTCCAAGGAGTGGTTTGATATGATCCATGAGATG
GGAGCCAAGAGACGCGCGGCTATTGAGGAAGAGCCACGGTTACGTGAAGTTGAAGAATTTTCTAAAGCAGGGGAGAGCTCTCGACAAAGGGAAGTTTCAATCGGTAACGT
TTCTAACCCTTCAACTGACCATACTTCTTGCAGGAAGAAACCATTCGTGACTTACAGTGCCAAGAAAGCCGAAACTGAGAAGCCACTGATCATTGAGCCCCTTAAAACAG
CAAGGATGCCAGTAGACATGTTTGAAGACATGATTCGGCAAGCTGTTGCACAGGCCCTATTAATTGCTGAAGGATATCGGGTTGAGCAAGATGCACTCAATGAGATAAGG
GCTGAAAAAGAAAGAGAGGAAGCTGAACAGCTGCAAGAAGTAGAAGAAAAGGCCCCTAAAGGGCCAAGAAAAGAAGAATCAGAAAAAGAAGAGAAAAAAGACAGTGAAGG
ACAGAATGCGACCGCATTTGGGCAGCATTCTGAGGAAGGCCAAGCTGAGGCCATAGATGAGCAGCAAGATGATGAGCCCCTTGATCCCTTGTTCGAGGATGACATTAGGG
GACCTTCACCAGCTGCTGAAAGTTCTTCTTCAGAAGAGAAAAAGGATGAAAAGAAAATTGAAGAAAAAGAGTCTGAGACCTCTAGTGACAGTGAGGCCGAGATAGACTCA
GAAATAAAGGAATTGGACGATGATCAAATTCCAATTTCTTCTGCATTGAGGAAGAAGAGAAGAAGAGAACTCAGAGCTGAGAGGAGGACCAAGAATAAAAATGACCCCAT
ATTCGCGATGAGGCCGAGGACTAGGTCCACGGACACCTCTCCTGAACCTCCTACCGCCACACCAATCAAGCCAAAGGTTACATCGCCTAAGGTTGCATCGCCAAAGAATC
CATTCCCTGAGGTCCTTAGAGATGTGAATTTCCAAGAGAAGATGGATATTATGAGGAAACGAGGAGTTCTCAAGCCGAGCAGGGACCTTGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGGCTGCACCAAGTGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAACAGGTGG
TCCGGGAGGGGTGCTCGACATGCTGGTCAAGGCGATCAACGCCAAGGAGAAGGGTCTGCCCCACGCATGCACAAAGCAAGAACCGAGAGACCCTCAGAATCCGAGCGGTT
CTCGACACAAGAAGCCCACACCTACCGATTTTCTCCACCAAAGCCAAAAACCCGTGGAAAAACCTCTTAGAAAACGCTCCAAGGAGTGGTTTGATATGATCCATGAGATG
GGAGCCAAGAGACGCGCGGCTATTGAGGAAGAGCCACGGTTACGTGAAGTTGAAGAATTTTCTAAAGCAGGGGAGAGCTCTCGACAAAGGGAAGTTTCAATCGGTAACGT
TTCTAACCCTTCAACTGACCATACTTCTTGCAGGAAGAAACCATTCGTGACTTACAGTGCCAAGAAAGCCGAAACTGAGAAGCCACTGATCATTGAGCCCCTTAAAACAG
CAAGGATGCCAGTAGACATGTTTGAAGACATGATTCGGCAAGCTGTTGCACAGGCCCTATTAATTGCTGAAGGATATCGGGTTGAGCAAGATGCACTCAATGAGATAAGG
GCTGAAAAAGAAAGAGAGGAAGCTGAACAGCTGCAAGAAGTAGAAGAAAAGGCCCCTAAAGGGCCAAGAAAAGAAGAATCAGAAAAAGAAGAGAAAAAAGACAGTGAAGG
ACAGAATGCGACCGCATTTGGGCAGCATTCTGAGGAAGGCCAAGCTGAGGCCATAGATGAGCAGCAAGATGATGAGCCCCTTGATCCCTTGTTCGAGGATGACATTAGGG
GACCTTCACCAGCTGCTGAAAGTTCTTCTTCAGAAGAGAAAAAGGATGAAAAGAAAATTGAAGAAAAAGAGTCTGAGACCTCTAGTGACAGTGAGGCCGAGATAGACTCA
GAAATAAAGGAATTGGACGATGATCAAATTCCAATTTCTTCTGCATTGAGGAAGAAGAGAAGAAGAGAACTCAGAGCTGAGAGGAGGACCAAGAATAAAAATGACCCCAT
ATTCGCGATGAGGCCGAGGACTAGGTCCACGGACACCTCTCCTGAACCTCCTACCGCCACACCAATCAAGCCAAAGGTTACATCGCCTAAGGTTGCATCGCCAAAGAATC
CATTCCCTGAGGTCCTTAGAGATGTGAATTTCCAAGAGAAGATGGATATTATGAGGAAACGAGGAGTTCTCAAGCCGAGCAGGGACCTTGCCTGA
Protein sequenceShow/hide protein sequence
MSGLHQVFNVSVGSTGIVRGDDVCWLHAVFRAKLTGGPGGVLDMLVKAINAKEKGLPHACTKQEPRDPQNPSGSRHKKPTPTDFLHQSQKPVEKPLRKRSKEWFDMIHEM
GAKRRAAIEEEPRLREVEEFSKAGESSRQREVSIGNVSNPSTDHTSCRKKPFVTYSAKKAETEKPLIIEPLKTARMPVDMFEDMIRQAVAQALLIAEGYRVEQDALNEIR
AEKEREEAEQLQEVEEKAPKGPRKEESEKEEKKDSEGQNATAFGQHSEEGQAEAIDEQQDDEPLDPLFEDDIRGPSPAAESSSSEEKKDEKKIEEKESETSSDSEAEIDS
EIKELDDDQIPISSALRKKRRRELRAERRTKNKNDPIFAMRPRTRSTDTSPEPPTATPIKPKVTSPKVASPKNPFPEVLRDVNFQEKMDIMRKRGVLKPSRDLA