CuGenDBv2

Gene ID	Spg017466
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SWIM-type domain-containing protein
Genome location	scaffold4:39798046..39807268
RNA-Seq Expression	Spg017466
Synteny	Spg017466
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR006564 - Zinc finger, PMZ-type IPR007527 - Zinc finger, SWIM-type

Homology

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GenBank top hits

e value

%identity

Alignment

RVW42770.1 hypothetical protein CK203_079903 [Vitis vinifera]

3.6e-37

46.39

Show/hide

Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW+ +GIPCSH +A    + +D  + V+ YY+L  Y +CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP
        +F PIP +S WP P    + PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP

RVW52006.1 hypothetical protein CK203_068088 [Vitis vinifera]

1.8e-44

50.6

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Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW+ +GIPCSH +A C    +D  +FV  +Y++  Y  CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR
        QF PIP Q+ WPEP+   V P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR

RVW83159.1 hypothetical protein CK203_044939 [Vitis vinifera]

3.6e-37

46.39

Show/hide

Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW+ +GIPCSH +A    + +D  + V+ YY+L  Y +CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP
        +F PIP +S WP P    + PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP

RVW92351.1 hypothetical protein CK203_032440 [Vitis vinifera]

4.1e-41

48.77

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Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        Y I+ +  +E+RA+ H +++F     I +VTT+ +   M KG     VRL + +C CNKW+ +GIPCSH +  C    +D  +F+  +Y++  Y  CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR
        QF PIPDQ+ WPEP+   V  + + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNR
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR

RVX19406.1 hypothetical protein CK203_008540 [Vitis vinifera]

1.8e-44

50.6

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Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW+ +GIPCSH +A C    +D  +FV  +Y++  Y  CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR
        QF PIP Q+ WPEP+   V P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR

TrEMBL top hits

e value

%identity

Alignment

A0A438EWG2 SWIM-type domain-containing protein

8.5e-45

50.6

Show/hide

Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW+ +GIPCSH +A C    +D  +FV  +Y++  Y  CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR
        QF PIP Q+ WPEP+   V P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR

A0A438FUH8 SWIM-type domain-containing protein

1.7e-37

46.39

Show/hide

Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW+ +GIPCSH +A    + +D  + V+ YY+L  Y +CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP
        +F PIP +S WP P    + PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP

A0A438HFK5 SWIM-type domain-containing protein

1.7e-37

46.39

Show/hide

Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+     EA+A+ H + +F       +V T+++   M KG  K  V+L + +C CNKW+ +GIPCSH +A    + +D  + V+ YY+L  Y +CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP
        +F PIP +S WP P    + PD + +R  GRPRSSRIRNEMD +EP+V+IRCG+C+  GHNRRNCP
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCP

A0A438I6L2 SWIM-type domain-containing protein

2.0e-41

48.77

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Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        Y I+ +  +E+RA+ H +++F     I +VTT+ +   M KG     VRL + +C CNKW+ +GIPCSH +  C    +D  +F+  +Y++  Y  CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR
        QF PIPDQ+ WPEP+   V  + + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNR
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNR

A0A438KDW5 SWIM-type domain-containing protein

8.5e-45

50.6

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Query:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP
        YAI+ +  +++RAN H  ++F     I +VTT+ +   M KG     V+L + +C CNKW+ +GIPCSH +A C    +D  +FV  +Y++  Y  CY P
Subjt:  YAIDMLIPWEARANSHKIHVFDYDLGICDVTTSINPITM-KGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVP

Query:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR
        QF PIP Q+ WPEP+   V P+ + VR  GRPRSSRIRNEMDWREP+VK+RCG+C+QEGHNRR CP+R
Subjt:  QFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRSSRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49920.1 MuDR family transposase

3.4e-09

36.23

Show/hide

Query:  VRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSG
        V+L D +C C +++    PC HA+A C E+ ++ L++V   Y +  Y   Y  +F P+P+ S WPE  G
Subjt:  VRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAGAAGGTCAGTTAAGTCGCGTCTCTACAAGAGACGCGACATTGTTGGGAAGCGAAATGCCAGAGATTCCGTCAGGAATCTCTGGCGAGATGTGACTAGTCGCGTCTC
TTGCAGAGACGCGACAGTCTTGGAACCACAACGATTCTCCGCGCCGTCGCATCGTCAGTCATCCATAGTCATCCATCAGTCATCAGTCACTTCCGTTTTTATTTTTCAGA
CCATTGAAAGCTTAATTTTGAAATTTGTGGAAAAGAATTCAAAGAATATTCACACACAAGGACGTTGTCTCAAAATCATATTTAGTATCATAGTTATCATGGAATACGTT
GGATTTATATGCTACATGGGTGGGAATATAGTCCACGGTCTGAATGGTATAGAGTACGATGTCGGGCCATCTGTTATGATCAATTTTCATCGGGATATTGCATTCGAAGA
TTTTATCCAAGGATTATGCAATGGCCTATCAATTGATAGAACTAGAGGGTTGGAGGTCATATTTAGATACGAAACTAAAGGATTTGAAGGGTCCACTTATTATGCTCCGG
TATCATTACGAAGCGAGGTTGATCTTAGGTTTATGATGACCCACGCTCCTTCTCTTCCCTCTAGAGTAGAGCTTTTTATCTCTCAACCGAACAACGTAAGTATAACACCT
GAAGTTGATTATACCCATGGACAATACTATATCCCTGAACAAGACTATAGCCAGGAAGTTGAAGGTGAAGATAACCTTCAGCTTGATGATCAGAACATTCATTTTTCACA
GAATGACGGTGACGGTGACGATGACGATGACGATGACTATATCCCTGAACAAGACTCAATGGTTGTGACGAATGACGATGTTGGAACGGAATCTGATAATGATAGCACAG
ATGAAGCATCCGATGATAGTGTAGAGGAAGCGCCGCAGATGTATGCAATTGACATGCTAATTCCATGGGAAGCACGAGCAAACAGTCACAAAATCCACGTGTTCGATTAT
GATCTGGGTATATGTGATGTCACTACATCAATTAACCCAATAACAATGAAGGGTGGAACGAAACATCGAGTACGTTTGTGTGATGAATCGTGTGTTTGCAATAAGTGGAA
AATATATGGCATCCCATGTTCCCACGCCATTGCTGCCTGCAAAGAAATTGGGGTAGACTACCTGCGGTTTGTTAAACCTTACTATAAGCTACCAACTTATTTGGCTTGTT
ATGTGCCCCAATTTGAACCAATCCCAGATCAAAGTTGTTGGCCTGAACCAAGTGGTCAAAAAGTGGTTCCAGACGTCTCCTATGTGAGAGGTGTAGGTCGACCACGTAGT
TCTCGCATCAGAAATGAGATGGATTGGAGGGAGCCCGCGGTCAAGATACGTTGTGGAGTTTGTAGGCAAGAAGGACACAATCGTAGAAATTGTCCTCATAGAGCATCTAG
ACGAATGCAATAG

mRNA sequence

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Protein sequence

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MRRSVKSRLYKRRDIVGKRNARDSVRNLWRDVTSRVSCRDATVLEPQRFSAPSHRQSSIVIHQSSVTSVFIFQTIESLILKFVEKNSKNIHTQGRCLKIIFSIIVIMEYV
GFICYMGGNIVHGLNGIEYDVGPSVMINFHRDIAFEDFIQGLCNGLSIDRTRGLEVIFRYETKGFEGSTYYAPVSLRSEVDLRFMMTHAPSLPSRVELFISQPNNVSITP
EVDYTHGQYYIPEQDYSQEVEGEDNLQLDDQNIHFSQNDGDGDDDDDDDYIPEQDSMVVTNDDVGTESDNDSTDEASDDSVEEAPQMYAIDMLIPWEARANSHKIHVFDY
DLGICDVTTSINPITMKGGTKHRVRLCDESCVCNKWKIYGIPCSHAIAACKEIGVDYLRFVKPYYKLPTYLACYVPQFEPIPDQSCWPEPSGQKVVPDVSYVRGVGRPRS
SRIRNEMDWREPAVKIRCGVCRQEGHNRRNCPHRASRRMQ

Spg017466 (gene) of Sponge gourd (cylindrica) v1 genome