; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017472 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017472
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA ligase
Genome locationscaffold4:40765691..40767730
RNA-Seq ExpressionSpg017472
SyntenySpg017472
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0006297 - nucleotide-excision repair, DNA gap filling (biological process)
GO:0006303 - double-strand break repair via nonhomologous end joining (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0010165 - response to X-ray (biological process)
GO:0051103 - DNA ligation involved in DNA repair (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0032807 - DNA ligase IV complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR012308 - DNA ligase, ATP-dependent, N-terminal
IPR029710 - DNA ligase 4
IPR036599 - DNA ligase, ATP-dependent, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598897.1 DNA ligase 4, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5192.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

KAG7029849.1 DNA ligase 4 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-5192.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

XP_022929706.1 DNA ligase 4 [Cucurbita moschata]2.0e-5192.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

XP_022996609.1 DNA ligase 4 [Cucurbita maxima]2.0e-5192.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

XP_023546649.1 DNA ligase 4 isoform X2 [Cucurbita pepo subsp. pepo]2.0e-5192.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

TrEMBL top hitse value%identityAlignment
A0A1S3BQX9 DNA ligase1.8e-5092.11Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        M+E IKF+VLSSLFDWIQRSK SAKKRSKFRKFLDTFCS S YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSR+SDDALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        NAGNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

A0A1S3BRM3 DNA ligase1.8e-5092.11Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        M+E IKF+VLSSLFDWIQRSK SAKKRSKFRKFLDTFCS S YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSR+SDDALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        NAGNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

A0A5D3BTU0 DNA ligase 4 isoform X31.8e-5092.11Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        M+E IKF+VLSSLFDWIQRSK SAKKRSKFRKFLDTFCS S YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSR+SDDALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        NAGNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

A0A6J1ENX2 DNA ligase9.6e-5292.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

A0A6J1K974 DNA ligase9.6e-5292.98Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA
        MTELIKFSVLSSLFDWIQRSK SAKKRSKFRKF+DTFCS +DYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRES+DALRLINWRKGGAKTGA
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGA

Query:  NAGNFALVAAEVVE
        N GNFALVAAEV++
Subjt:  NAGNFALVAAEVVE

SwissProt top hitse value%identityAlignment
P49917 DNA ligase 44.5e-1438.52Show/hide
Query:  IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR
        + F+ L S  + IQ+SK  A+K   FR+FLD++    D            ++ A+RLILP L+RER  YG+KE++LA   I+ L + R+  DAL+L+N+R
Subjt:  IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR

Query:  KGGAKTGANAGNFALVAAEVVE
             T  +AG+FA++A  V++
Subjt:  KGGAKTGANAGNFALVAAEVVE

Q5R6L3 DNA ligase 44.5e-1438.52Show/hide
Query:  IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR
        + F+ L S  + IQ+SK  A+K   FR+FLD++    D            ++ A+RLILP L+RER  YG+KE++LA   I+ L + R+  DAL+L+N+R
Subjt:  IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR

Query:  KGGAKTGANAGNFALVAAEVVE
             T  +AG+FA++A  V++
Subjt:  KGGAKTGANAGNFALVAAEVVE

Q7X7E9 Putative DNA ligase 41.3e-2652.14Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFC---SSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAK
        M   ++F +L ++F  + R + +AKKR++ R  LD         DYFSA+RL+LP LDRERG+YGLKE+ LA+ L+DALG++++S DA+RL NWR+GG  
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFC---SSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAK

Query:  TGANAGNFALVAAEVVE
           NAGNFALVAAEV++
Subjt:  TGANAGNFALVAAEVVE

Q8BTF7 DNA ligase 41.3e-1338.21Show/hide
Query:  IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR
        + F+ L S  + IQ+ K  A+K   F++FLD++    D            ++ A+RLILP L+RER  YG+KE++LA   I+ L + RE  DA +L+N+R
Subjt:  IKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSD------------YFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWR

Query:  -KGGAKTGANAGNFALVAAEVVE
           GA+T  +AG+FA++A  V++
Subjt:  -KGGAKTGANAGNFALVAAEVVE

Q9LL84 DNA ligase 42.9e-4577.39Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGG-AKTG
        MTE IKFSVL SLF+WIQ+SK S++KRSKFRKFLDT+C  SDYF A+RLI+PSLDRERG+YGLKESVLATCLIDALG+SR++ DA+RL+NWRKGG AK G
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGG-AKTG

Query:  ANAGNFALVAAEVVE
        ANAGNF+L+AAEV++
Subjt:  ANAGNFALVAAEVVE

Arabidopsis top hitse value%identityAlignment
AT5G57160.1 DNA ligase IV2.1e-4677.39Show/hide
Query:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGG-AKTG
        MTE IKFSVL SLF+WIQ+SK S++KRSKFRKFLDT+C  SDYF A+RLI+PSLDRERG+YGLKESVLATCLIDALG+SR++ DA+RL+NWRKGG AK G
Subjt:  MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGG-AKTG

Query:  ANAGNFALVAAEVVE
        ANAGNF+L+AAEV++
Subjt:  ANAGNFALVAAEVVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGAACTGATCAAGTTCAGCGTGCTTTCGAGTCTGTTTGATTGGATTCAGCGGAGCAAGCCTTCCGCCAAGAAGCGTTCCAAGTTCCGCAAGTTTCTCGACACCTT
CTGCAGCTCTTCCGACTATTTTTCTGCCATCCGCTTGATTCTGCCTAGCCTCGATCGAGAGCGCGGCACCTATGGCCTCAAGGAGTCTGTTCTCGCCACTTGCCTTATTG
ACGCTCTTGGCATGTCTAGAGAGTCTGATGACGCTCTTCGTCTTATCAACTGGCGCAAAGGTGGTGCTAAGACTGGTGCTAATGCCGGTAATTTCGCTCTTGTTGCGGCT
GAGGTTGTTGAATCATATCCACATCGACTTCCAACTTCGTCTTCCCCTTGGCTTGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACGGAACTGATCAAGTTCAGCGTGCTTTCGAGTCTGTTTGATTGGATTCAGCGGAGCAAGCCTTCCGCCAAGAAGCGTTCCAAGTTCCGCAAGTTTCTCGACACCTT
CTGCAGCTCTTCCGACTATTTTTCTGCCATCCGCTTGATTCTGCCTAGCCTCGATCGAGAGCGCGGCACCTATGGCCTCAAGGAGTCTGTTCTCGCCACTTGCCTTATTG
ACGCTCTTGGCATGTCTAGAGAGTCTGATGACGCTCTTCGTCTTATCAACTGGCGCAAAGGTGGTGCTAAGACTGGTGCTAATGCCGGTAATTTCGCTCTTGTTGCGGCT
GAGGTTGTTGAATCATATCCACATCGACTTCCAACTTCGTCTTCCCCTTGGCTTGATTAA
Protein sequenceShow/hide protein sequence
MTELIKFSVLSSLFDWIQRSKPSAKKRSKFRKFLDTFCSSSDYFSAIRLILPSLDRERGTYGLKESVLATCLIDALGMSRESDDALRLINWRKGGAKTGANAGNFALVAA
EVVESYPHRLPTSSSPWLD