; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017513 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017513
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold4:34403697..34408117
RNA-Seq ExpressionSpg017513
SyntenySpg017513
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035081.1 hypothetical protein E6C27_scaffold57G001500 [Cucumis melo var. makuwa]5.2e-0443.75Show/hide
Query:  VQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY
        +Q   SV KGTT LLTL+RV V+S+L   +   ++ ++P          L+ LT+ + R+I  +Q+FIVSSGLR SYLG+
Subjt:  VQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY

KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]1.5e-0650.6Show/hide
Query:  GPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY
        GP VQD  SV KGTT LL+ + V VNSVL     +    L PK   L  R+ +A  T+ + RI+ N+Q+FIVSSGLR SYLG+
Subjt:  GPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY

KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]3.1e-0951.72Show/hide
Query:  MRGRGPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY
        MRG GP+VQD  SV KGTT LLTL+ V VNS+L    P+   SL  K             T+A+ RII  +QEF VSSGLR SYLG+
Subjt:  MRGRGPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY

TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.1e-0562.75Show/hide
Query:  YVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLG
        YVPSY   L P+M GLL +R  A LT+A+ RI+LN+Q+FIVS GLR SYLG
Subjt:  YVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLG

TrEMBL top hitse value%identityAlignment
A0A5A7U348 Uncharacterized protein7.0e-0750.6Show/hide
Query:  GPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY
        GP VQD  SV KGTT LL+ + V VNSVL     +    L PK   L  R+ +A  T+ + RI+ N+Q+FIVSSGLR SYLG+
Subjt:  GPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY

A0A5D3BX92 Uncharacterized protein2.5e-0443.75Show/hide
Query:  VQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY
        +Q   SV KGTT LLTL+RV V+S+L   +   ++ ++P          L+ LT+ + R+I  +Q+FIVSSGLR SYLG+
Subjt:  VQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY

A0A5D3CRT6 Uncharacterized protein1.5e-0951.72Show/hide
Query:  MRGRGPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY
        MRG GP+VQD  SV KGTT LLTL+ V VNS+L    P+   SL  K             T+A+ RII  +QEF VSSGLR SYLG+
Subjt:  MRGRGPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGY

A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass1.0e-0562.75Show/hide
Query:  YVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLG
        YVPSY   L P+M GLL +R  A LT+A+ RI+LN+Q+FIVS GLR SYLG
Subjt:  YVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGCGGGGCCCCTTTGTTCAAGACTCGAAGTCAGTATTTAAGGGAACAACCTCTTTACTAACCCTACAACGGGTAGCAGTGAATTCCGTCTTGCAAAGCTATGT
CCCCAGCTATCTATTTAGTCTTATCCCCAAAATGGTAGGCTTATTGAGTCGGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAAATAAACAAGAGT
TCATAGTTAGCTCAGGATTAAGATGGAGTTACCTAGGTTATATGAGATGCTCAGTTTCAACAGTAAACGGTGTTGGCCAATACGTTGATAAGTCATCGGTGCACCTTGGG
TACAAATGGCCAAGGCGCGATGCACAGTTCGAGGCCTTTGGTACAAATGGTCAAGGGTCGAACGCCGAGCTCCGTAGAGATCATTGTGGCCCTGGGTACAAATGGTCAGG
GGACAGTGCGGCTCGAAGGGTTAGTCTTGGAGAGCTTTGTGAGGGCTATGAGAGTTGGAAGTCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAATTCG
AGGCCTTGGGTACAAATGGTCAAGGGTCGAATGCCGAGCTCTGTAGAGAGCATTGTGGCCTTGGGTACAAATGGTCAGGGGATAGTGCGGCTCGAAGGATCAGTCTTGGA
GAGCCATGTAGGGGCTGCTTCCCAGTACCATGGTTGTACTTAAGGCTGTTCGTCGGTCGGTCAGAGTCGGTTTTGGATGAAAATCGACGCCGACAACTGACCTTTCGACT
GCATGGCAGTCATGACATGTGCACTCAGTGTAAGTTTCTTTTGTGTGCAAGGCAAGAAAACAGAGGAAATGCTGGAATTTACCCAGAAATGCGACTGCATTTCTGGGAAG
GCAAAATGAAATGTGACCGCATTTCTGGAAAAATAGAGACAGTTCCGAGTCGTCCGCGGGTCGGCAAGCTGCCTAAGGCACCCTATATCAACTATAGGGTTATAGGTTGC
ATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGCATAACGGTTATGAGGACTGCCTTGACTATGGTGATACAGAAGAGGCGCACGAGGAAGGACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGCGGGGCCCCTTTGTTCAAGACTCGAAGTCAGTATTTAAGGGAACAACCTCTTTACTAACCCTACAACGGGTAGCAGTGAATTCCGTCTTGCAAAGCTATGT
CCCCAGCTATCTATTTAGTCTTATCCCCAAAATGGTAGGCTTATTGAGTCGGCGATGTTTGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTAAATAAACAAGAGT
TCATAGTTAGCTCAGGATTAAGATGGAGTTACCTAGGTTATATGAGATGCTCAGTTTCAACAGTAAACGGTGTTGGCCAATACGTTGATAAGTCATCGGTGCACCTTGGG
TACAAATGGCCAAGGCGCGATGCACAGTTCGAGGCCTTTGGTACAAATGGTCAAGGGTCGAACGCCGAGCTCCGTAGAGATCATTGTGGCCCTGGGTACAAATGGTCAGG
GGACAGTGCGGCTCGAAGGGTTAGTCTTGGAGAGCTTTGTGAGGGCTATGAGAGTTGGAAGTCATCGGTGCACCTTGGGTACAAATGGCCAAGGGGCGATGCACAATTCG
AGGCCTTGGGTACAAATGGTCAAGGGTCGAATGCCGAGCTCTGTAGAGAGCATTGTGGCCTTGGGTACAAATGGTCAGGGGATAGTGCGGCTCGAAGGATCAGTCTTGGA
GAGCCATGTAGGGGCTGCTTCCCAGTACCATGGTTGTACTTAAGGCTGTTCGTCGGTCGGTCAGAGTCGGTTTTGGATGAAAATCGACGCCGACAACTGACCTTTCGACT
GCATGGCAGTCATGACATGTGCACTCAGTGTAAGTTTCTTTTGTGTGCAAGGCAAGAAAACAGAGGAAATGCTGGAATTTACCCAGAAATGCGACTGCATTTCTGGGAAG
GCAAAATGAAATGTGACCGCATTTCTGGAAAAATAGAGACAGTTCCGAGTCGTCCGCGGGTCGGCAAGCTGCCTAAGGCACCCTATATCAACTATAGGGTTATAGGTTGC
ATTCGTGAATTATCTATGTCGGAGTCGAGTCACAGAAATGTGCATAACGGTTATGAGGACTGCCTTGACTATGGTGATACAGAAGAGGCGCACGAGGAAGGACCATAG
Protein sequenceShow/hide protein sequence
MRGRGPFVQDSKSVFKGTTSLLTLQRVAVNSVLQSYVPSYLFSLIPKMVGLLSRRCLATLTHANQRIILNKQEFIVSSGLRWSYLGYMRCSVSTVNGVGQYVDKSSVHLG
YKWPRRDAQFEAFGTNGQGSNAELRRDHCGPGYKWSGDSAARRVSLGELCEGYESWKSSVHLGYKWPRGDAQFEALGTNGQGSNAELCREHCGLGYKWSGDSAARRISLG
EPCRGCFPVPWLYLRLFVGRSESVLDENRRRQLTFRLHGSHDMCTQCKFLLCARQENRGNAGIYPEMRLHFWEGKMKCDRISGKIETVPSRPRVGKLPKAPYINYRVIGC
IRELSMSESSHRNVHNGYEDCLDYGDTEEAHEEGP