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Spg017566 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017566
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Genome locationscaffold4:37877641..37884818
RNA-Seq ExpressionSpg017566
SyntenySpg017566
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034014.1 uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]7.9e-1246.15Show/hide
Query:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        V M+  ++ ++V    +E  + +D EPES  PP C  E++V  N + EFRTETDDEFE+++FDG E+ +PS  FT LD + VD+  EHDP+
Subjt:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

KAA0040476.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.8e-1146.15Show/hide
Query:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        V M+  ++ ++V    +E  + +D EPES  PP C  E++V  N + EFRTETDDEFE+++FDG E+ +PS  FT LD + VD   EHDP+
Subjt:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

KAA0041167.1 uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa]2.4e-1631.91Show/hide
Query:  GLHGVEYDRPACGGFTVNARSGVVFEQFVEMIGLSLGVDVRGNQLEIV----------------------------------------------------
        G  G++YD+PACGGFT++  SG+VFEQF+E++G S+G+D+R + +EI+                                                    
Subjt:  GLHGVEYDRPACGGFTVNARSGVVFEQFVEMIGLSLGVDVRGNQLEIV----------------------------------------------------

Query:  --------------QCIDPEPESVGP-PCDGEDVVIDNNFKEFRTETD---DEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
                      Q I P+ E V     D E+++ +N+  +FRTE D   DEFE+ +FDGREH +PS   TQ+D   +DS  EHDP+
Subjt:  --------------QCIDPEPESVGP-PCDGEDVVIDNNFKEFRTETD---DEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

KAA0054449.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa]6.7e-1144.94Show/hide
Query:  MIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        M+ L++ ++V    +E  + +D +PES  PP C  E++V  N + EFRT+TDDEFE+++FDG E+ +PS  FT LD   VD   EHDP+
Subjt:  MIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

TYJ95836.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa]1.8e-1146.15Show/hide
Query:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        V M+  ++ ++V    +E  + +D EPES  PP C  E++V  N + EFRTETDDEFE+++FDG E+ +PS  FT LD + VD   EHDP+
Subjt:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

TrEMBL top hitse value%identityAlignment
A0A5A7SS31 DBD_Tnp_Mut domain-containing protein3.8e-1246.15Show/hide
Query:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        V M+  ++ ++V    +E  + +D EPES  PP C  E++V  N + EFRTETDDEFE+++FDG E+ +PS  FT LD + VD+  EHDP+
Subjt:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

A0A5A7THR5 Uncharacterized protein1.1e-1631.91Show/hide
Query:  GLHGVEYDRPACGGFTVNARSGVVFEQFVEMIGLSLGVDVRGNQLEIV----------------------------------------------------
        G  G++YD+PACGGFT++  SG+VFEQF+E++G S+G+D+R + +EI+                                                    
Subjt:  GLHGVEYDRPACGGFTVNARSGVVFEQFVEMIGLSLGVDVRGNQLEIV----------------------------------------------------

Query:  --------------QCIDPEPESVGP-PCDGEDVVIDNNFKEFRTETD---DEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
                      Q I P+ E V     D E+++ +N+  +FRTE D   DEFE+ +FDGREH +PS   TQ+D   +DS  EHDP+
Subjt:  --------------QCIDPEPESVGP-PCDGEDVVIDNNFKEFRTETD---DEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

A0A5D3BAB0 Serine/threonine-protein phosphatase 7 long form-like protein8.5e-1246.15Show/hide
Query:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        V M+  ++ ++V    +E  + +D EPES  PP C  E++V  N + EFRTETDDEFE+++FDG E+ +PS  FT LD + VD   EHDP+
Subjt:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

A0A5D3CT32 Mediator of RNA polymerase II transcription subunit 12-like isoform X13.2e-1144.94Show/hide
Query:  MIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        M+ L++ ++V    +E  + +D +PES  PP C  E++V  N + EFRT+TDDEFE+++FDG E+ +PS  FT LD   VD   EHDP+
Subjt:  MIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

A0A5D3DIM2 Serine/threonine-protein phosphatase 7 long form-like protein8.5e-1246.15Show/hide
Query:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM
        V M+  ++ ++V    +E  + +D EPES  PP C  E++V  N + EFRTETDDEFE+++FDG E+ +PS  FT LD + VD   EHDP+
Subjt:  VEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPP-CDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSIIFTQLDGHTVDSTIEHDPM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAGCCTGAATCGAAGGTATCGTTGTCGAGGACCGGCAACGCGGACGACTGTCGTCTTCGTGAGCTGTCGTCTTTGCTCGAGAGAACGCCCCCATTCAGATCTCTC
TCTCTCTCCCCAGCGTATGCCCCCATTCAGATCTTCTTCTTCTCTAACCTCTTTTTCTTACCCAACCACCATCGTCTCTCTATTTCTTCCAGAATCGTCGCTCGTTTCAG
ATCTCTCCATTTTCTGCTCTCTCTCTTCACCGCACAAATCAGCGTCAACTCGTAGCAAAAGCTTTGCTATTTCCATGGACCCTTTGGCCGCCGCATGGTGGAGAGGCGAA
GAGTGGCAAGAATCCAACTCTCCAGTGAGGTTGGGCCTACATGGAGTTGAATATGATCGACCAGCATGTGGTGGTTTCACTGTTAATGCTCGTAGTGGGGTTGTCTTTGA
ACAATTTGTTGAAATGATAGGATTATCGCTGGGCGTAGATGTTAGGGGAAATCAATTAGAGATAGTCCAATGTATTGATCCTGAGCCTGAATCAGTAGGACCTCCATGTG
ATGGTGAAGATGTAGTCATAGATAATAATTTTAAAGAGTTCAGGACCGAAACAGATGATGAATTTGAAGATTTGGAATTTGATGGTCGTGAACATACCATCCCTTCAATA
ATATTCACCCAACTAGATGGTCACACGGTAGATAGCACTATAGAACACGACCCAATGCATAAAATGGGAAGATGGTTGCAAATGGTGACTTCGTGCCATAAAAAAGAAGT
TTCATTTGAAGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTTTGAGACTTCTAG
AGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTTTCTGAGAAAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTGTTCAAGTCCCGGAATCAGTCCTTAAGGGAA
CACACATCTACTTGCCCCAATAGGGGAAGAAGTGAATTCCATCTTGCCCCTGAAATGATTTTAGAACAACTAACACTTTCAGCCAGCAGACAAGAGTTCGTCGAGAGGCA
GACTCAAACTTACTGGACTTATGTTAAAAGATGGGATACCGCGTTGAGGAAAGCACTTCAAGCTAACTTTTCCAAACCTTACCCAGTCTTTCTTGTATTCCCGGATGGTT
TGCTGAACCCTTGGATCCGACCACCACCCGTTGAGAGAGAAGAGGAAGATGATGATGCTGGTCAGGAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCAGCCTGAATCGAAGGTATCGTTGTCGAGGACCGGCAACGCGGACGACTGTCGTCTTCGTGAGCTGTCGTCTTTGCTCGAGAGAACGCCCCCATTCAGATCTCTC
TCTCTCTCCCCAGCGTATGCCCCCATTCAGATCTTCTTCTTCTCTAACCTCTTTTTCTTACCCAACCACCATCGTCTCTCTATTTCTTCCAGAATCGTCGCTCGTTTCAG
ATCTCTCCATTTTCTGCTCTCTCTCTTCACCGCACAAATCAGCGTCAACTCGTAGCAAAAGCTTTGCTATTTCCATGGACCCTTTGGCCGCCGCATGGTGGAGAGGCGAA
GAGTGGCAAGAATCCAACTCTCCAGTGAGGTTGGGCCTACATGGAGTTGAATATGATCGACCAGCATGTGGTGGTTTCACTGTTAATGCTCGTAGTGGGGTTGTCTTTGA
ACAATTTGTTGAAATGATAGGATTATCGCTGGGCGTAGATGTTAGGGGAAATCAATTAGAGATAGTCCAATGTATTGATCCTGAGCCTGAATCAGTAGGACCTCCATGTG
ATGGTGAAGATGTAGTCATAGATAATAATTTTAAAGAGTTCAGGACCGAAACAGATGATGAATTTGAAGATTTGGAATTTGATGGTCGTGAACATACCATCCCTTCAATA
ATATTCACCCAACTAGATGGTCACACGGTAGATAGCACTATAGAACACGACCCAATGCATAAAATGGGAAGATGGTTGCAAATGGTGACTTCGTGCCATAAAAAAGAAGT
TTCATTTGAAGGATTGGAATTCCGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTTTGAGACTTCTAG
AGGCAGGAGACTTGTGGGAGCCTTTGGGAGAATTTTCTGAGAAAGTTCCTCTCGGGCCAGGAGAGGACGGCGCGCCTTTGTTCAAGTCCCGGAATCAGTCCTTAAGGGAA
CACACATCTACTTGCCCCAATAGGGGAAGAAGTGAATTCCATCTTGCCCCTGAAATGATTTTAGAACAACTAACACTTTCAGCCAGCAGACAAGAGTTCGTCGAGAGGCA
GACTCAAACTTACTGGACTTATGTTAAAAGATGGGATACCGCGTTGAGGAAAGCACTTCAAGCTAACTTTTCCAAACCTTACCCAGTCTTTCTTGTATTCCCGGATGGTT
TGCTGAACCCTTGGATCCGACCACCACCCGTTGAGAGAGAAGAGGAAGATGATGATGCTGGTCAGGAGGACTAG
Protein sequenceShow/hide protein sequence
MCSLNRRYRCRGPATRTTVVFVSCRLCSRERPHSDLSLSPQRMPPFRSSSSLTSFSYPTTIVSLFLPESSLVSDLSIFCSLSSPHKSASTRSKSFAISMDPLAAAWWRGE
EWQESNSPVRLGLHGVEYDRPACGGFTVNARSGVVFEQFVEMIGLSLGVDVRGNQLEIVQCIDPEPESVGPPCDGEDVVIDNNFKEFRTETDDEFEDLEFDGREHTIPSI
IFTQLDGHTVDSTIEHDPMHKMGRWLQMVTSCHKKEVSFEGLEFRNSVKRKRDWDRFCEHHHYGYTGMTLRLLEAGDLWEPLGEFSEKVPLGPGEDGAPLFKSRNQSLRE
HTSTCPNRGRSEFHLAPEMILEQLTLSASRQEFVERQTQTYWTYVKRWDTALRKALQANFSKPYPVFLVFPDGLLNPWIRPPPVEREEEDDDAGQED