; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017587 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017587
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionribosome maturation protein SBDS
Genome locationscaffold9:32980216..32984221
RNA-Seq ExpressionSpg017587
SyntenySpg017587
Gene Ontology termsGO:0042256 - mature ribosome assembly (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002140 - Ribosome maturation protein Sdo1/SBDS
IPR003604 - Matrin/U1-C-like, C2H2-type zinc finger
IPR013087 - Zinc finger C2H2-type
IPR018023 - Ribosome maturation protein SBDS, conserved site
IPR018978 - Ribosome maturation protein Sdo1/SBDS, C-terminal
IPR019783 - Ribosome maturation protein Sdo1/SBDS, N-terminal
IPR036236 - Zinc finger C2H2 superfamily
IPR036786 - Ribosome maturation protein SBDS, N-terminal domain superfamily
IPR037188 - Ribosome maturation protein Sdo1/SBDS, central domain superfamily
IPR039100 - Ribosome maturation protein Sdo1/SBDS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592159.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. sororia]6.7e-19093.61Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLLDKLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPP+ +K  ES IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR

Query:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CSTCNVVVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLK+YSF
Subjt:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

XP_022936066.1 ribosome maturation protein SBDS [Cucurbita moschata]6.7e-19093.61Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLLDKLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPP+ +K  ES IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR

Query:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CSTCNVVVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLK+YSF
Subjt:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

XP_022975304.1 ribosome maturation protein SBDS [Cucurbita maxima]3.3e-18993.06Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLLDKLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPP+ +K  ES IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR

Query:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CSTCNVVVGDA QFREHHKSEWHKHN+KRKTKNLPPLTEEEC VE+A+GDSESDLK+YSF
Subjt:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

XP_023535044.1 ribosome maturation protein SBDS [Cucurbita pepo subsp. pepo]1.1e-18993.89Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLLDKLNAW+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR
        SND SGNQQRSIICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPP+ +K  ES IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR

Query:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CSTCNVVVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLK+YSF
Subjt:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

XP_038886377.1 ribosome maturation protein SBDS [Benincasa hispida]7.1e-19294.71Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRY +PEQN PSLLDKLNAW+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPP+Q+K  ES IPQL+EALQKQTISV+  N  KEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKRC

Query:  STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGD+ESDLK+YSF
Subjt:  STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

TrEMBL top hitse value%identityAlignment
A0A1S3CRW0 ribosome maturation protein SBDS2.3e-18893.04Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF TDDQTEICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY +PEQN PSLLDKLNAW+ASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSFCLHEEGDTNVDQY+DDYENVEL P+Q+K  ES IPQLSEALQKQTISV+  N  KEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKRC

Query:  STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        STCNV VGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLK+YSF
Subjt:  STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

A0A5A7UXA4 Ribosome maturation protein SBDS2.3e-18893.04Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAF TDDQTEICLKILKEGELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMR+RY +PEQN PSLLDKLNAW+ASIV
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKRC
        SNDQSGNQQRSIICELDPSFYRDCNPLMSEL GRFEVLSFCLHEEGDTNVDQY+DDYENVEL P+Q+K  ES IPQLSEALQKQTISV+  N  KEGKRC
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKRC

Query:  STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        STCNV VGDAT+FREHHKS+WHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLK+YSF
Subjt:  STCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

A0A6J1DHK8 ribosome maturation protein SBDS8.0e-18993Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQT ICLKILKEGELQIA K
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFA+DPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLL+KLNAWNAS +
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIKESPIPQLSEALQKQTISVDGGNVTKEGKRCST
        SNDQSG+QQRS+ICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDD++N ELPP+Q+KES IPQLSEALQ+QTISV+G N  KEGKRCST
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIKESPIPQLSEALQKQTISVDGGNVTKEGKRCST

Query:  CNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CNV VGDATQFREHHK EWHKHNVKRKTKNLPPLTEEEC VELAMG+SESDLKDYSF
Subjt:  CNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

A0A6J1F6G6 ribosome maturation protein SBDS3.2e-19093.61Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLLDKLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPP+ +K  ES IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR

Query:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CSTCNVVVGDA QFREHHKSEWHKHNVKRKTKNLPPLTEEEC VE+AMGDSESDLK+YSF
Subjt:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

A0A6J1IK36 ribosome maturation protein SBDS1.6e-18993.06Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQ EICLKILKEGELQIAGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYT+PEQN PSLLDKLN+W+ASI+
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR
        SNDQSGNQQRS+ICELDPSFYRDCNPLMSELQG+FEVLSFCLHEEGDTNVDQY DDD+ENVELPP+ +K  ES IPQLSEALQKQ ISVDGGN  KEGKR
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQY-DDDYENVELPPKQIK--ESPIPQLSEALQKQTISVDGGNVTKEGKR

Query:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
        CSTCNVVVGDA QFREHHKSEWHKHN+KRKTKNLPPLTEEEC VE+A+GDSESDLK+YSF
Subjt:  CSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

SwissProt top hitse value%identityAlignment
P70122 Ribosome maturation protein SBDS9.7e-6755.47Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQTEIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      + S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM-SELQGR--FEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+  E +GR   EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM-SELQGR--FEVLSFCLHEEGD

Q3SWZ6 Ribosome maturation protein SBDS3.7e-6654.66Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQTEIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Q5RAZ2 Ribosome maturation protein SBDS7.0e-6553.85Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQTEIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++ +G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Q5RK30 Ribosome maturation protein SBDS1.3e-6654.66Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQTEIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      + S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
         S  QQ  I+C +DP  +R+ + L+   ++ +G  EVLS    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Q9Y3A5 Ribosome maturation protein SBDS7.0e-6553.85Show/hide
Query:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE
        S+  P  Q RLTNVAVVR+KR G RFEIACYKNKV+ WRSGVEKDLDEVLQ+  V+ NVSKG +AK +DL +AF TDDQTEIC +IL +GE+Q++ KER 
Subjt:  SLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKERE

Query:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND
         QL   FRDIATIV  K  NPETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L+++  I+R+ MR+R+ +P      L +KL      I S D
Subjt:  AQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSND

Query:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD
            QQ  I+C +DP  +R+ + L+   ++ +G  EVL+    EEGD
Subjt:  QSGNQQRSIICELDPSFYRDCNPLM---SELQGRFEVLSFCLHEEGD

Arabidopsis top hitse value%identityAlignment
AT1G43860.1 sequence-specific DNA binding transcription factors6.3e-13062.26Show/hide
Query:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK
        MS++LVQP+GQKRLTNVAVVRLK+ G RFEIACYKNKVLSWRSGVEKD+DEVLQS  VYSNVSKGVLAK+KDL  +F +DD T+IC+ IL++GELQ+AGK
Subjt:  MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGK

Query:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV
        ERE+Q S+QFRDIATIVMQKT NPET+RPYTISM+ERLM EIHFAVDP+ +SKKQAL+VI ELQK FPIKRSPMR+R T+P QN PSLL+KL  W+ S+V
Subjt:  EREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIV

Query:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYE-----NVELPPKQIK----ESPIPQLSEALQKQTISV-----
        S D+SG Q  S +CE++P  +R+C+  +  +QGR E+L+  +H EGDT++D YD+  +     +  L P + +      P+ +LS+ LQKQ IS      
Subjt:  SNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYE-----NVELPPKQIK----ESPIPQLSEALQKQTISV-----

Query:  DGGNVTKEGKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF
          G   K+G +CSTCN  VG+A Q+REH KS+WHKHN+KRKT+ LPP++ +EC  E+ M DS +DLKDYSF
Subjt:  DGGNVTKEGKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGDSESDLKDYSF

AT2G24500.1 Zinc finger protein 6222.4e-0442.86Show/hide
Query:  GKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE
        G  C++CN    D  + + H+KSEWH++N+KRK   +P +TE
Subjt:  GKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE

AT4G31420.1 Zinc finger protein 6223.2e-0440.48Show/hide
Query:  GKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE

AT4G31420.2 Zinc finger protein 6223.2e-0440.48Show/hide
Query:  GKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE
        G  C+ CN+   D  +   H+KS+WH++N+KRK   +P +TE
Subjt:  GKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCGATCACTGGTGCAGCCGATCGGACAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAGAGACACGGTCTCCGCTTCGAGATTGCCTGTTACAAGAACAA
GGTCCTTTCTTGGCGCTCTGGCGTGGAAAAAGATCTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCGAAAACAAAAGACTTAA
AAGCAGCTTTTGACACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTT
CGTGATATTGCAACCATTGTTATGCAGAAGACCTTTAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGGCTCATGCGTGAAATTCATTTTGCTGTTGA
TCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAAAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATACTATACCTGAACAGA
ACTCTCCATCTCTCCTTGATAAGTTAAATGCCTGGAATGCTAGTATCGTTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTT
TATCGAGACTGTAATCCATTAATGAGTGAACTGCAAGGGAGATTCGAAGTTCTCTCTTTCTGTTTGCATGAGGAAGGGGACACCAATGTGGATCAGTATGATGATGATTA
CGAGAATGTAGAACTCCCACCCAAACAAATCAAAGAATCGCCCATTCCTCAGCTAAGTGAAGCTTTACAAAAGCAGACCATCTCTGTTGATGGCGGAAATGTAACAAAAG
AAGGAAAACGCTGCAGCACATGCAACGTAGTTGTGGGGGATGCTACTCAGTTCAGAGAGCATCACAAGAGTGAATGGCACAAGCATAACGTCAAGCGCAAAACCAAGAAT
CTCCCTCCTCTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGACTCAGAGTCTGACCTCAAGGACTATTCGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCGATCACTGGTGCAGCCGATCGGACAGAAGAGGCTGACGAACGTGGCGGTGGTTCGTTTGAAGAGACACGGTCTCCGCTTCGAGATTGCCTGTTACAAGAACAA
GGTCCTTTCTTGGCGCTCTGGCGTGGAAAAAGATCTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCAAATGTTTCGAAAGGAGTTCTTGCGAAAACAAAAGACTTAA
AAGCAGCTTTTGACACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTCCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTT
CGTGATATTGCAACCATTGTTATGCAGAAGACCTTTAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGGCTCATGCGTGAAATTCATTTTGCTGTTGA
TCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAAAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATACTATACCTGAACAGA
ACTCTCCATCTCTCCTTGATAAGTTAAATGCCTGGAATGCTAGTATCGTTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTT
TATCGAGACTGTAATCCATTAATGAGTGAACTGCAAGGGAGATTCGAAGTTCTCTCTTTCTGTTTGCATGAGGAAGGGGACACCAATGTGGATCAGTATGATGATGATTA
CGAGAATGTAGAACTCCCACCCAAACAAATCAAAGAATCGCCCATTCCTCAGCTAAGTGAAGCTTTACAAAAGCAGACCATCTCTGTTGATGGCGGAAATGTAACAAAAG
AAGGAAAACGCTGCAGCACATGCAACGTAGTTGTGGGGGATGCTACTCAGTTCAGAGAGCATCACAAGAGTGAATGGCACAAGCATAACGTCAAGCGCAAAACCAAGAAT
CTCCCTCCTCTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGTGACTCAGAGTCTGACCTCAAGGACTATTCGTTTTGA
Protein sequenceShow/hide protein sequence
MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKEREAQLSNQF
RDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTIPEQNSPSLLDKLNAWNASIVSNDQSGNQQRSIICELDPSF
YRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENVELPPKQIKESPIPQLSEALQKQTISVDGGNVTKEGKRCSTCNVVVGDATQFREHHKSEWHKHNVKRKTKN
LPPLTEEECTVELAMGDSESDLKDYSF