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Spg017649 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017649
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpre-rRNA-processing protein TSR1 homolog
Genome locationscaffold9:33085067..33086227
RNA-Seq ExpressionSpg017649
SyntenySpg017649
Gene Ontology termsGO:0042254 - ribosome biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR012948 - AARP2CN
IPR039761 - Ribosome biogenesis protein Bms1/Tsr1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576073.1 Pre-rRNA-processing protein TSR1-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4650.22Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFK+QRLTVPHWRNQRPYLMSQKVDMVADN  PGKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+TDDEDSD+DNESDGM+LDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ
        GYTN++DDLNNPG+SDDDQASFELI+SDQ
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ

KAG7014590.1 Pre-rRNA-processing protein TSR1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-4751.09Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN  PGKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+TDDEDSD+DNESDGM+LDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ
        GYTNE+DDLNNPG+SDDDQASFELI+SDQ
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ

XP_023513549.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo]6.8e-4651.32Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN T GKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+TDDEDSD+DNESDGMMLDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSD
        GYTNEVDDLNNP +SDDDQASFELI+SD
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSD

XP_023547507.1 pre-rRNA-processing protein TSR1 homolog [Cucurbita pepo subsp. pepo]1.2e-4751.97Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN TPGKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+TDDEDSD DNESDGM+LDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ
        GYTNEVDDLNNPG+SDDDQASFELI+SDQ
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ

XP_038875506.1 pre-rRNA-processing protein TSR1 homolog [Benincasa hispida]2.3e-4651.09Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN T GKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIGETDDEDSD+DNE+DGMMLDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ
        GYTNEVDDLNNPG+SDDDQAS E I+SDQ
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ

TrEMBL top hitse value%identityAlignment
A0A5A7T9F0 Pre-rRNA-processing protein TSR1-like protein1.7e-4247.6Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWR QRPYLMSQKVDMVADN TPG+CTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+++DEDSD+DNE+DGMMLDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ
         YTNEV+DLNN G+SDDDQAS E  +SDQ
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSDQ

A0A6J1GPU5 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog4.7e-4551.33Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN TPGKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  ---------------------------------------------------------------------QEAWEIGETDDE-DSDIDNESDGMMLDSGYT
                                                                             QEAWEIG TDDE DS++DNESD M+LDSGYT
Subjt:  ---------------------------------------------------------------------QEAWEIGETDDE-DSDIDNESDGMMLDSGYT

Query:  NEVDDLNNPGVSDDDQASFELIHSDQ
        NE+DDLNNPG+SDDDQASFELI+SDQ
Subjt:  NEVDDLNNPGVSDDDQASFELIHSDQ

A0A6J1H8A7 pre-rRNA-processing protein TSR1 homolog1.6e-4550.88Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN T GKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+TDDEDSD+DNESDGMMLDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSD
        GYTNEVDDLNNP +SDDDQAS ELI+SD
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSD

A0A6J1JU15 LOW QUALITY PROTEIN: pre-rRNA-processing protein TSR1 homolog4.0e-4449.56Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPC----FLL--------
        S   E C  Y ++TK+ELHKFMWLFKEQRLTVPHW NQRPYLMSQKVDMVADN TPGKCTLLLTGYL A+SLSVN+L+ SSV       F L        
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPC----FLL--------

Query:  ------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDSG
                                                                                QEAWEIG+ DD DSD+DNESDGM+LDSG
Subjt:  ------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDSG

Query:  YTNEVDDLNNPGVSDDDQASFELIHSDQ
        YTN +DDLNNP +SDDDQASFELI+SDQ
Subjt:  YTNEVDDLNNPGVSDDDQASFELIHSDQ

A0A6J1L0W3 pre-rRNA-processing protein TSR1 homolog3.3e-4651.32Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------
        S   E C  Y ++TKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADN T GKCTLLLTGYL ARSLSVN+LV  +    F L            
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLL------------

Query:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS
                                                                                 QEAWEIG+TDDEDSD+DNESDGMMLDS
Subjt:  -------------------------------------------------------------------------QEAWEIGETDDEDSDIDNESDGMMLDS

Query:  GYTNEVDDLNNPGVSDDDQASFELIHSD
        GYTNEVDDLNNP +SDDDQASFELI+SD
Subjt:  GYTNEVDDLNNPGVSDDDQASFELIHSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G42440.1 FUNCTIONS IN: molecular_function unknown1.0e-2347.54Show/hide
Query:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCF------LLQEAWEI
        S   E C  Y ++T+DELHKFMWLFK QRLTVPHWR+QR Y++++K  M+ D+ + GKCTLLL+GYL AR LSVN+LV  S    F      +L++ + +
Subjt:  SGLTEYCSAY-SNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCF------LLQEAWEI

Query:  GETDDEDS-DIDNESDGMMLDS
         E  +++S ++D+  D  +L S
Subjt:  GETDDEDS-DIDNESDGMMLDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTATTCGAATACTAAAGATGAGTTACACAAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCAC
TGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAAAAGGTTGATATGGTAGCTGATAATTATACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTAC
ATGCTCGAAGTCTCTCTGTGAATAAGCTGGTAGAGTCCTCTGTTTTTCCATGTTTCTTGCTTCAGGAAGCTTGGGAAATAGGTGAGACAGATGATGAGGATTCTGATATT
GACAATGAATCTGATGGTATGATGTTAGACAGTGGTTATACAAATGAAGTGGATGACCTTAATAATCCTGGCGTCAGTGATGATGATCAAGCTTCTTTTGAGTTAATACA
TTCTGATCAGAGACAGATATGGATTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTTTCTGTTTTAAGATCTCTGGGCTTACCGAGTACTGCAGTGCTTATTCGAATACTAAAGATGAGTTACACAAGTTTATGTGGCTTTTTAAGGAGCAAAGGCTCAC
TGTTCCTCATTGGAGAAATCAAAGGCCTTATTTGATGTCTCAAAAGGTTGATATGGTAGCTGATAATTATACTCCAGGAAAGTGTACCCTTCTTCTCACTGGTTATCTAC
ATGCTCGAAGTCTCTCTGTGAATAAGCTGGTAGAGTCCTCTGTTTTTCCATGTTTCTTGCTTCAGGAAGCTTGGGAAATAGGTGAGACAGATGATGAGGATTCTGATATT
GACAATGAATCTGATGGTATGATGTTAGACAGTGGTTATACAAATGAAGTGGATGACCTTAATAATCCTGGCGTCAGTGATGATGATCAAGCTTCTTTTGAGTTAATACA
TTCTGATCAGAGACAGATATGGATTCTATGA
Protein sequenceShow/hide protein sequence
MPFCFKISGLTEYCSAYSNTKDELHKFMWLFKEQRLTVPHWRNQRPYLMSQKVDMVADNYTPGKCTLLLTGYLHARSLSVNKLVESSVFPCFLLQEAWEIGETDDEDSDI
DNESDGMMLDSGYTNEVDDLNNPGVSDDDQASFELIHSDQRQIWIL