; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017749 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017749
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold9:31792824..31796148
RNA-Seq ExpressionSpg017749
SyntenySpg017749
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065961.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.8e-0940.4Show/hide
Query:  ISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAE
        I++  + R     + K ++Q +D   + +A  I K + E SK  + +K+NPL+++    S +SK   +PDVMSVMMA++  +  MAEMERK+NLLMK E
Subjt:  ISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAE

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]2.6e-0842.37Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG
        + K ++QG+D    A+A  I K + ES K  + +K+NPL+      S +S    +PDVMSVMMAD+  +  MAEMERK+NLLMK  +VD     I  L  
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG

Query:  CSGREKMQ-RNEKESKRT
           +E+MQ R   ES +T
Subjt:  CSGREKMQ-RNEKESKRT

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.4e-0833.72Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG
        + K ++QG+D    A+A  I K + ES K  + +K+NPL+      S +S    +PDVMSVMMAD+  +  MAEMERK+NLLMK  +VD     I  L  
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG

Query:  CSGREKMQ-RNEKESKRTK----STFGQHLTSVETPSLERLD-AGIPYQNRRKKVTASRRCDLSVSTLRNFL
           +E+MQ R   ES +T        G+++     P  +    A +  Q  +  +T+S R      +  +F+
Subjt:  CSGREKMQ-RNEKESKRTK----STFGQHLTSVETPSLERLD-AGIPYQNRRKKVTASRRCDLSVSTLRNFL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.4e-0833.72Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG
        + K ++QG+D    A+A  I K + ES K  + +K+NPL+      S +S    +PDVMSVMMAD+  +  MAEMERK+NLLMK  +VD     I  L  
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG

Query:  CSGREKMQ-RNEKESKRTK----STFGQHLTSVETPSLERLD-AGIPYQNRRKKVTASRRCDLSVSTLRNFL
           +E+MQ R   ES +T        G+++     P  +    A +  Q  +  +T+S R      +  +F+
Subjt:  CSGREKMQ-RNEKESKRTK----STFGQHLTSVETPSLERLD-AGIPYQNRRKKVTASRRCDLSVSTLRNFL

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]2.6e-0842.37Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG
        + K ++QG+D    A+A  I K + ES K  + +K+NPL+      S +S    +PDVMSVMMAD+  +  MAEMERK+NLLMK  +VD     I  L  
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAEMVDWSYSAILELIG

Query:  CSGREKMQ-RNEKESKRT
           +E+MQ R   ES +T
Subjt:  CSGREKMQ-RNEKESKRT

TrEMBL top hitse value%identityAlignment
A0A5A7U5D6 Ty3-gypsy retrotransposon protein4.8e-0842.27Show/hide
Query:  ISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMK
        ++N+ + R     + K + Q +D     VA  I K + ES K R+ +K+NPL+++    S +SK    PDVMSV+MADI  D  MAE ERK+N LMK
Subjt:  ISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMK

A0A5A7UF60 Ty3-gypsy retrotransposon protein1.4e-0733.33Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKA-EMVDWSYSAILELI
        + K ++Q +D     V S I K + ES K  + +K NPL+++    S  SK   +PDVMSVMMADI  +  MAEME+K+N LMKA E  D   +A+    
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKA-EMVDWSYSAILELI

Query:  GCSGREKMQRNEKESKRTKSTFGQHLTSVETPSLERLDAG--IPYQNRRKKVTASRRCDLSVSTLRNFLSR-IRV-FRGSVET
                    +E  RT+ T      S +TP ++  D G  +  +N+ ++ + S    LS+  L++ ++  IR  + GS +T
Subjt:  GCSGREKMQRNEKESKRTKSTFGQHLTSVETPSLERLDAG--IPYQNRRKKVTASRRCDLSVSTLRNFLSR-IRV-FRGSVET

A0A5A7UG56 Ty3-gypsy retrotransposon protein8.1e-0831.95Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKA-EMVDWSYSAILELI
        + K ++Q +D     VA  I K + ES K  + +K+NPL+++    S +SK   +PDVMSV+MADI  +  M EMERK+N LMKA E  D   +A+    
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKA-EMVDWSYSAILELI

Query:  GCSGREKMQRNEKESKRTKSTFGQHLTSVETPSLERLDAG-IPYQNRRKKVTASRRCDLSVSTLRNFLS
                    +E  RT+ T    + S +TP ++  D G    Q  + ++ +     LS+  L++ ++
Subjt:  GCSGREKMQRNEKESKRTKSTFGQHLTSVETPSLERLDAG-IPYQNRRKKVTASRRCDLSVSTLRNFLS

A0A5A7VJT9 Ty3-gypsy retrotransposon protein3.3e-0940.4Show/hide
Query:  ISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAE
        I++  + R     + K ++Q +D   + +A  I K + E SK  + +K+NPL+++    S +SK   +PDVMSVMMA++  +  MAEMERK+NLLMK E
Subjt:  ISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKAE

A0A5D3BY54 Ty3-gypsy retrotransposon protein2.8e-0847.06Show/hide
Query:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKA
        + K + Q +D     VA  I K + ES K  + +K+NPL+++   +S +SK   +PDVMSVMMADI  +  MAEMERK+N LMKA
Subjt:  KDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLNLLMKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCCTGCCCTCTTTATGACACGAGAGGGACTTCTGTTTGTTGGTTGGATCTCAAACAAGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTAGTCCA
GGGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCA
TTCCAACATCTAAGCAGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAAC
CTCTTAATGAAGGCAGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGGTGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATCAAAGAGAAC
AAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGAC
GCTGCGACCTTAGCGTCTCGACGCTGCGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCGAGACGCTGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCCCTGCCCTCTTTATGACACGAGAGGGACTTCTGTTTGTTGGTTGGATCTCAAACAAGTTGTTCATTAGAGGAGCACTGGTACTTAAGGATAAAGAGGTAGTCCA
GGGGGAGGATCATACTCCTCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATCGAGGAATCCTCTAAGGATAGGGTTGCAGTCAAAGACAACCCGCTATTCGAATCTGTCA
TTCCAACATCTAAGCAGTCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATATAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAAC
CTCTTAATGAAGGCAGAAATGGTTGATTGGAGCTATAGCGCAATATTGGAGTTAATCGGGTGCTCGGGACGTGAAAAGATGCAAAGAAATGAAAAAGAATCAAAGAGAAC
AAAGTCAACATTCGGTCAACATTTGACCAGCGTCGAGACGCCATCCCTTGAGCGTCTCGACGCTGGCATTCCATATCAGAATAGGCGCAAAAAGGTCACAGCGTCGAGAC
GCTGCGACCTTAGCGTCTCGACGCTGCGTAATTTCCTTTCCAGAATACGCGTGTTTAGAGGCAGCGTCGAGACGCTGTCTTGA
Protein sequenceShow/hide protein sequence
MGPALFMTREGLLFVGWISNKLFIRGALVLKDKEVVQGEDHTPLAVASRISKLIEESSKDRVAVKDNPLFESVIPTSKQSKDTLNPDVMSVMMADIDQDERMAEMERKLN
LLMKAEMVDWSYSAILELIGCSGREKMQRNEKESKRTKSTFGQHLTSVETPSLERLDAGIPYQNRRKKVTASRRCDLSVSTLRNFLSRIRVFRGSVETLS