CuGenDBv2

Gene ID	Spg017765
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNI-like superfamily protein isoform 2
Genome location	scaffold9:36243806..36247286
RNA-Seq Expression	Spg017765
Synteny	Spg017765
Gene Ontology terms	GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025152.1 protein AMN1-like protein [Cucumis melo var. makuwa]

3.6e-53

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG +VP EALPNIALDEH I DIDPKTWAV R T RAP+SPS PS  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALASQASK+LQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

XP_004139789.1 uncharacterized protein LOC101203553 [Cucumis sativus]

1.1e-52

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG +VP EALPNIALDEH I DIDPKTWAV R TARAP+SPS  S  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALASQASK+LQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

XP_008447736.1 PREDICTED: uncharacterized protein LOC103490139 [Cucumis melo]

3.6e-53

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG +VP EALPNIALDEH I DIDPKTWAV R T RAP+SPS PS  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALASQASK+LQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

XP_022941466.1 uncharacterized protein LOC111446756 [Cucurbita moschata]

1.1e-52

88.37

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        MFSTECPRITVNPKPSPF F G RVPREALPNIALDEHAI DIDPKTWAVARCT+RAPV P   S  ELSLAEKFRLAF+ERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALAS+ASKTLQS T
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

XP_038896648.1 uncharacterized protein LOC120084911 [Benincasa hispida]

4.7e-53

88.37

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG RVP EALPNIALDEHAI DI+P+TWAV R TA+APVSPS PS  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKAL LASQASKTLQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5D7 Uncharacterized protein

5.1e-53

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG +VP EALPNIALDEH I DIDPKTWAV R TARAP+SPS  S  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALASQASK+LQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

A0A1S3BJ08 uncharacterized protein LOC103490139

1.8e-53

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG +VP EALPNIALDEH I DIDPKTWAV R T RAP+SPS PS  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALASQASK+LQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

A0A5D3DI95 Protein AMN1-like protein

1.8e-53

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        +FSTECPRIT+NPKPSPFGFRG +VP EALPNIALDEH I DIDPKTWAV R T RAP+SPS PS  ELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALASQASK+LQSRT
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

A0A6J1FL68 uncharacterized protein LOC111446756

5.1e-53

88.37

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        MFSTECPRITVNPKPSPF F G RVPREALPNIALDEHAI DIDPKTWAVARCT+RAPV P   S  ELSLAEKFRLAF+ERDTRLAPKRAKNARQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALAS+ASKTLQS T
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

A0A6J1IWS7 uncharacterized protein LOC111480610

4.3e-52

87.6

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        MFSTECPRITVNPKPSPF FRG RVPREALPNIALDEHAI DIDPKTWAVAR T+RAPV P   S  ELSLAEKFRLAF+ERDTRLAPKRAKN RQHQRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTLQSRT
        AEREW+TTSTRAKALALAS+ASKTLQS T
Subjt:  AEREWVTTSTRAKALALASQASKTLQSRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G26980.1 RNI-like superfamily protein

1.8e-34

60.8

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Query:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR
        M S+ECPRI VNPKPS   +R   VPREALP++ALDE  + DIDPKTW V   T       S P   ELS+AEKFRLAF ERD R+APKRAKNARQ QRR
Subjt:  MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRR

Query:  AEREWVTTSTRAKALALASQASKTL
        AER+W+ +S  AKA+  AS+A+++L
Subjt:  AEREWVTTSTRAKALALASQASKTL

Sequences

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CDS sequence

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ATGTTCTCCACAGAATGCCCGCGCATAACGGTAAATCCAAAGCCATCGCCATTTGGTTTCAGGGGGAGCCGAGTTCCGAGGGAAGCATTGCCAAATATCGCATTGGATGA
ACATGCCATTGCCGATATCGACCCCAAAACATGGGCAGTGGCCAGATGCACAGCAAGGGCTCCAGTTTCTCCATCGAAACCCTCAGAATTAGAATTGTCTTTGGCTGAGA
AATTCAGACTTGCATTCGTGGAAAGGGACACTCGATTAGCTCCAAAACGAGCCAAAAATGCAAGGCAACATCAGAGGCGTGCTGAGAGGGAATGGGTGACGACGAGTACG
AGAGCCAAGGCGCTAGCCTTGGCCTCTCAAGCAAGTAAAACTTTGCAGAGTCGCACATAG

mRNA sequence

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Protein sequence

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MFSTECPRITVNPKPSPFGFRGSRVPREALPNIALDEHAIADIDPKTWAVARCTARAPVSPSKPSELELSLAEKFRLAFVERDTRLAPKRAKNARQHQRRAEREWVTTST
RAKALALASQASKTLQSRT

Spg017765 (gene) of Sponge gourd (cylindrica) v1 genome