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Spg017780 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017780
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold9:31912540..31917855
RNA-Seq ExpressionSpg017780
SyntenySpg017780
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]4.9e-0679.41Show/hide
Query:  RCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        R    PTQ AYHFG KTEWGAGN ITQDGIHSFP
Subjt:  RCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-0668.29Show/hide
Query:  GTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        G ++   R    PTQ AYHF  KTEWGAGNIITQDGIHSFP
Subjt:  GTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
KAA0046251.1 uncharacterized protein E6C27_scaffold284G00510 [Cucumis melo var. makuwa]4.9e-0684.38Show/hide
Query:  TPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        T  PTQ AYHFG KT WGAGNIITQDGIHSFP
Subjt:  TPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.7e-0647.44Show/hide
Query:  SSRRRCSYKREIIEVIKEGCNGQSNY--QSSENLIVAGTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        +SR  C+  RE++   ++  +G+  +   S+   ++   K R  R    PTQ AYHFG KTEWGAGNIITQDGIHSFP
Subjt:  SSRRRCSYKREIIEVIKEGCNGQSNY--QSSENLIVAGTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]5.9e-1262.07Show/hide
Query:  GTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEVDECSLKWCLKDL
        G ++   R    PTQ AYHF  KTEWGAGNIITQDGIH FP    VD+CSL+WC++DL
Subjt:  GTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEVDECSLKWCLKDL
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class2.3e-0679.41Show/hide
Query:  RCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        R    PTQ AYHFG KTEWGAGN ITQDGIHSFP
Subjt:  RCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
A0A5A7TY17 Uncharacterized protein2.3e-0684.38Show/hide
Query:  TPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        T  PTQ AYHFG KT WGAGNIITQDGIHSFP
Subjt:  TPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
A0A5A7VFG5 Ty1-copia retrotransposon protein8.1e-0747.44Show/hide
Query:  SSRRRCSYKREIIEVIKEGCNGQSNY--QSSENLIVAGTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
        +SR  C+  RE++   ++  +G+  +   S+   ++   K R  R    PTQ AYHFG KTEWGAGNIITQDGIHSFP
Subjt:  SSRRRCSYKREIIEVIKEGCNGQSNY--QSSENLIVAGTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFP
A0A5A7VIJ2 Cysteine-rich RLK (Receptor-like protein kinase) 83.1e-0678.79Show/hide
Query:  TQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEV
        TQ AYHFG KTEWGAGNIITQDGIHSFP  + +
Subjt:  TQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEV
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-942.9e-1262.07Show/hide
Query:  GTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEVDECSLKWCLKDL
        G ++   R    PTQ AYHF  KTEWGAGNIITQDGIH FP    VD+CSL+WC++DL
Subjt:  GTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEVDECSLKWCLKDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCAGTCAGTGACTATGCAGAAGGCACAGTTCACTAAGATCGCTGACTGGCCGGAAGCCCAAGACGCGCGAGAGTTCAAGAGGCGGGACACGGTCGGAGAGATGCT
CCTGGCGCAGCACGAGCTATCGGACGATGAGAGAGTTGCTCTTATGCGCATCCTCTTCGCCAAACCGAAGATGACAAATATGATCACACGAATGTGTGACGTGCCTAACA
TTAATCTTTTTTGTTATAACGATCATACTTTAGCGATCTACGACCGAATGGCATCAATTGTGACAGATGAAGTGGATGAGGATATGTCTAACACGAGCAGTAAAATCAGG
CTAGAATATGCATCATCAGCAGGGAGTAGTAGGAGACGCTGTTCCTACAAGAGAGAGATAATTGAGGTCATAAAGGAAGGATGCAATGGACAGTCAAATTACCAGTCTTC
AGAGAATCTCATCGTGGCCGGAACGAAAGAACGAACGGGACGCTGCACGCCTACGCCGACTCAACAAGCCTACCATTTTGGGGGCAAGACCGAATGGGGAGCTGGGAACA
TAATCACACAAGATGGAATTCACTCCTTCCCGACTTTTGAGGAAGTAGATGAGTGTTCCCTTAAGTGGTGTCTCAAGGACCTCTGGGGTGGGGTGAAAGACATCTCATTC
ATTCTCCTAATCTCAGAGAATTCCCCTGAAGGCTCCCACCAGTCTCCTGCCTCTAGAAGTCTCAGAGTTATACCGGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGCAGTCAGTGACTATGCAGAAGGCACAGTTCACTAAGATCGCTGACTGGCCGGAAGCCCAAGACGCGCGAGAGTTCAAGAGGCGGGACACGGTCGGAGAGATGCT
CCTGGCGCAGCACGAGCTATCGGACGATGAGAGAGTTGCTCTTATGCGCATCCTCTTCGCCAAACCGAAGATGACAAATATGATCACACGAATGTGTGACGTGCCTAACA
TTAATCTTTTTTGTTATAACGATCATACTTTAGCGATCTACGACCGAATGGCATCAATTGTGACAGATGAAGTGGATGAGGATATGTCTAACACGAGCAGTAAAATCAGG
CTAGAATATGCATCATCAGCAGGGAGTAGTAGGAGACGCTGTTCCTACAAGAGAGAGATAATTGAGGTCATAAAGGAAGGATGCAATGGACAGTCAAATTACCAGTCTTC
AGAGAATCTCATCGTGGCCGGAACGAAAGAACGAACGGGACGCTGCACGCCTACGCCGACTCAACAAGCCTACCATTTTGGGGGCAAGACCGAATGGGGAGCTGGGAACA
TAATCACACAAGATGGAATTCACTCCTTCCCGACTTTTGAGGAAGTAGATGAGTGTTCCCTTAAGTGGTGTCTCAAGGACCTCTGGGGTGGGGTGAAAGACATCTCATTC
ATTCTCCTAATCTCAGAGAATTCCCCTGAAGGCTCCCACCAGTCTCCTGCCTCTAGAAGTCTCAGAGTTATACCGGTGTAG
Protein sequenceShow/hide protein sequence
MRQSVTMQKAQFTKIADWPEAQDAREFKRRDTVGEMLLAQHELSDDERVALMRILFAKPKMTNMITRMCDVPNINLFCYNDHTLAIYDRMASIVTDEVDEDMSNTSSKIR
LEYASSAGSSRRRCSYKREIIEVIKEGCNGQSNYQSSENLIVAGTKERTGRCTPTPTQQAYHFGGKTEWGAGNIITQDGIHSFPTFEEVDECSLKWCLKDLWGGVKDISF
ILLISENSPEGSHQSPASRSLRVIPV