CuGenDBv2

Gene ID	Spg017782
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U6 snRNA-associated Sm-like protein LSm4
Genome location	scaffold9:33876684..33877261
RNA-Seq Expression	Spg017782
Synteny	Spg017782
Gene Ontology terms	GO:0000956 - nuclear-transcribed mRNA catabolic process (biological process) GO:0000387 - spliceosomal snRNP assembly (biological process) GO:0006298 - mismatch repair (biological process) GO:0033962 - cytoplasmic mRNA processing body assembly (biological process) GO:0000932 - P-body (cellular component) GO:0005681 - spliceosomal complex (cellular component) GO:0005688 - U6 snRNP (cellular component) GO:0032300 - mismatch repair complex (cellular component) GO:0097526 - spliceosomal tri-snRNP complex (cellular component) GO:0120115 - Lsm2-8 complex (cellular component) GO:0030983 - mismatched DNA binding (molecular function) GO:0017070 - U6 snRNA binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR034101 - Sm-like protein Lsm4 IPR027141 - Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 IPR010920 - LSM domain superfamily IPR001163 - LSM domain, eukaryotic/archaea-type

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF2315001.1 hypothetical protein GH714_037497 [Hevea brasiliensis]

7.4e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

XP_002283804.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Vitis vinifera]

7.4e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

XP_022770923.1 probable U6 snRNA-associated Sm-like protein LSm4 isoform X1 [Durio zibethinus]

7.4e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

XP_022926288.1 sm-like protein LSM4 isoform X1 [Cucurbita moschata]

7.4e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

XP_039129750.1 probable U6 snRNA-associated Sm-like protein LSm4 [Dioscorea cayenensis subsp. rotundata]

7.4e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

TrEMBL top hits

e value

%identity

Alignment

A0A059A9J1 U6 snRNA-associated Sm-like protein LSm4

3.6e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

A0A1U7WYS5 U6 snRNA-associated Sm-like protein LSm4

3.6e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

A0A1U8KMG3 U6 snRNA-associated Sm-like protein LSm4

3.6e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

A0A2G9IAA6 U6 snRNA-associated Sm-like protein LSm4

3.6e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

A0A5D2E990 U6 snRNA-associated Sm-like protein LSm4

3.6e-18

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

SwissProt top hits

e value

%identity

Alignment

F4K4E3 Sm-like protein LSM4

9.7e-21

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

Q3ZBK6 U6 snRNA-associated Sm-like protein LSm4

1.0e-17

86.67

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+D
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

Q43582 Probable U6 snRNA-associated Sm-like protein LSm4

9.7e-21

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

Q9LGE6 Probable U6 snRNA-associated Sm-like protein LSm4

9.7e-21

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

Q9ZRU9 Probable U6 snRNA-associated Sm-like protein LSm4

3.7e-20

95.56

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

Arabidopsis top hits

e value

%identity

Alignment

AT1G20580.1 Small nuclear ribonucleoprotein family protein

2.6e-05

43.18

Show/hide

Query:  LLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KD
Subjt:  LLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

AT1G76300.1 snRNP core protein SMD3

2.2e-04

38.64

Show/hide

Query:  LLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KD
Subjt:  LLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

AT5G27720.1 Small nuclear ribonucleoprotein family protein

6.9e-22

97.78

Show/hide

Query:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
        SLLK AQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD
Subjt:  SLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TCCCCTTCGCTCCTAAAGATCGCTCAAGGGCATCCAATGTTGGTGGAACTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCA
TCTCCGGGAAGTCATCTGCACTTCCAAAGATTTGGCGGATGTCTGA

mRNA sequence

Show/hide mRNA sequence

TCCCCTTCGCTCCTAAAGATCGCTCAAGGGCATCCAATGTTGGTGGAACTGAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGATACATGGATGAACATTCA
TCTCCGGGAAGTCATCTGCACTTCCAAAGATTTGGCGGATGTCTGA

Protein sequence

Show/hide protein sequence

SPSLLKIAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDLADV

Spg017782 (gene) of Sponge gourd (cylindrica) v1 genome