; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017825 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017825
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, unclassified
Genome locationscaffold9:35300347..35307458
RNA-Seq ExpressionSpg017825
SyntenySpg017825
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAM01179.2 Putative retroelement [Oryza sativa Japonica Group]1.7e-2137.64Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D   GGN+  G  ++E        G EL K+G  WR+ NG+ + +  DPW+ R  SR P+      + R VS+L++  G WD D I +HF+  D   IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP
        +I L    E D I W+ D  GRFSV+SAYHLA  +  + + S S      R W  LWK  + P+  N PL N +   P
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP

ABB46931.2 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]1.7e-2137.64Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D   GGN+  G  ++E        G EL K+G  WR+ NG+ + +  DPW+ R  SR P+      + R VS+L++  G WD D I +HF+  D   IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP
        +I L    E D I W+ D  GRFSV+SAYHLA  +  + + S S      R W  LWK  + P+  N PL N +   P
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP

CAH66131.1 OSIGBa0135L04.5 [Oryza sativa]6.3e-2135.19Show/hide
Query:  PKERSSILFEQISIARCALDIVVHGLKELSRAAW-ILGCFGSAFVRNVRSMTRKSCGL-DVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGR
        PK+   + F    +   AL         L+R AW ++    S   R +R+    S  L D   GGN+  G  ++E        G EL K+G  WRV NG 
Subjt:  PKERSSILFEQISIARCALDIVVHGLKELSRAAW-ILGCFGSAFVRNVRSMTRKSCGL-DVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGR

Query:  HIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKAS
         I I  DPWL R  SR P+ V    + + V++L+ + G WDE +++R F   D   IL+I L    E+D + W+ D  G FSV+SAY LA ++  I   S
Subjt:  HIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKAS

Query:  GSCE-ESQVRWRNLWK
        GS E E+   W  +WK
Subjt:  GSCE-ESQVRWRNLWK

EEC83100.1 hypothetical protein OsI_28249 [Oryza sativa Indica Group]8.2e-2140.13Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D    GN+  G   +E        G EL K+G  WRV NGR I I  DPW+ R  SR P+      + + VSELL+ +G WD   I++ F+  DV  IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQE-IGKASGSCEESQVRWRNLW
        SI   R  E D + W+ D  GRFSV+SAYHLA  +   +  +S S +E    W  LW
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQE-IGKASGSCEESQVRWRNLW

EEC84030.1 hypothetical protein OsI_30257 [Oryza sativa Indica Group]7.5e-2238.61Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D   GGN+ +G  ++E        G EL K+G  W + NG+ + +  DPW+ R  SR P+      + R VS+L++  G WD D I  HF+  DV  IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWK
        +I L    E+D I W+ D  GRFSV+SAYHLA  + ++   S S      R W  LWK
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWK

TrEMBL top hitse value%identityAlignment
A0A803P9P5 Uncharacterized protein1.8e-2139.85Show/hide
Query:  GRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGRFSV
        G+EL  +G RW+V NG  I    DPWL  I S  PL+   P    +VSEL+     W+  L+++ F+ SDV  I SIPL   ++ D+++WN ++ G +SV
Subjt:  GRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGRFSV

Query:  KSAYHLATKIQEIGKASGSCEESQVRWRNLWKL
        KS Y LAT+++E   A+ S   S   W+  W L
Subjt:  KSAYHLATKIQEIGKASGSCEESQVRWRNLWKL

B8B9K5 zf-RVT domain-containing protein3.6e-2238.61Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D   GGN+ +G  ++E        G EL K+G  W + NG+ + +  DPW+ R  SR P+      + R VS+L++  G WD D I  HF+  DV  IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWK
        +I L    E+D I W+ D  GRFSV+SAYHLA  + ++   S S      R W  LWK
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWK

Q01M84 OSIGBa0135L04.5 protein3.1e-2135.19Show/hide
Query:  PKERSSILFEQISIARCALDIVVHGLKELSRAAW-ILGCFGSAFVRNVRSMTRKSCGL-DVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGR
        PK+   + F    +   AL         L+R AW ++    S   R +R+    S  L D   GGN+  G  ++E        G EL K+G  WRV NG 
Subjt:  PKERSSILFEQISIARCALDIVVHGLKELSRAAW-ILGCFGSAFVRNVRSMTRKSCGL-DVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGR

Query:  HIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKAS
         I I  DPWL R  SR P+ V    + + V++L+ + G WDE +++R F   D   IL+I L    E+D + W+ D  G FSV+SAY LA ++  I   S
Subjt:  HIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKAS

Query:  GSCE-ESQVRWRNLWK
        GS E E+   W  +WK
Subjt:  GSCE-ESQVRWRNLWK

Q33AJ4 Retrotransposon protein, putative, unclassified8.0e-2237.64Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D   GGN+  G  ++E        G EL K+G  WR+ NG+ + +  DPW+ R  SR P+      + R VS+L++  G WD D I +HF+  D   IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP
        +I L    E D I W+ D  GRFSV+SAYHLA  +  + + S S      R W  LWK  + P+  N PL N +   P
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP

Q8S5K1 Putative retroelement8.0e-2237.64Show/hide
Query:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL
        +D   GGN+  G  ++E        G EL K+G  WR+ NG+ + +  DPW+ R  SR P+      + R VS+L++  G WD D I +HF+  D   IL
Subjt:  LDVQRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDIL

Query:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP
        +I L    E D I W+ D  GRFSV+SAYHLA  +  + + S S      R W  LWK  + P+  N PL N +   P
Subjt:  SIPLGRAEEKDEIVWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVR-WRNLWKLKDNPEGGNMPLENYQKPYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein8.5e-0828.89Show/hide
Query:  GRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGG---WDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGR
        G  L K+G R  + +G++I I  D  ++    R PL   E  K   ++ L    G    WD+  I +    SD   I  I L ++++ D+I+WN ++ G 
Subjt:  GRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGG---WDEDLIRRHFVASDVVDILSIPLGRAEEKDEIVWNLDSKGR

Query:  FSVKSAYHL-----ATKIQEIGKASGSCEESQVRW
        ++V+S Y L     +T I  I    GS +     W
Subjt:  FSVKSAYHL-----ATKIQEIGKASGSCEESQVRW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACAGCTTGGATCCCCTCTTCCGCGCGATTTCGCCTCTGTCCATCGGTGTTTTGGCTCTGTTTTGGATCGTTACGACATCATTTAGGGTTTCCGCGCCGTCGAAG
TAGTCGATTGGGTTTGAATAGTTGCGAGCTCGAATACCCACTACCCAAAGAGCGTTCTAGCATTCTGTTCGAGCAAATATCCATTGCCCGTTGTGCCTTAGACATAGTTG
TCCATGGTCTAAAGGAGCTTTCTCGGGCTGCTTGGATATTAGGTTGCTTTGGAAGCGCTTTTGTGCGCAACGTGCGTAGCATGACGCGGAAGTCATGTGGGCTAGATGTG
CAGCGTGGCGGTAATTCATGTGTTGGTTTGTGCAGCATGGAGCGTAATTTATGCGTTGGGTGCGGAGGTAGAGAGCTTTTTAAAGAAGGCTATAGGTGGCGAGTGAGCAA
TGGGAGACACATATTTATAAATGAAGATCCTTGGCTCAATAGAATTGGCAGTAGGTTCCCTCTAGTAGTGGGCGAGCCCCTGAAAGGCAGAAGAGTTAGTGAGCTTCTCA
ACATCCATGGGGGGTGGGATGAAGATCTGATTCGAAGGCATTTTGTGGCTTCTGATGTGGTTGACATCCTTTCTATCCCTCTAGGTCGTGCGGAGGAGAAAGATGAGATA
GTGTGGAACCTTGACTCAAAAGGGAGGTTTAGTGTAAAAAGTGCCTACCATCTAGCCACCAAAATCCAAGAGATAGGGAAAGCATCAGGATCTTGCGAGGAGAGCCAAGT
TAGATGGAGGAATTTATGGAAGCTTAAAGATAATCCCGAGGGCGGAAATATGCCTTTGGAAAATTATCAAAAACCTTATCCCATCCAAGTTAAACCTCCTAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCAACAGCTTGGATCCCCTCTTCCGCGCGATTTCGCCTCTGTCCATCGGTGTTTTGGCTCTGTTTTGGATCGTTACGACATCATTTAGGGTTTCCGCGCCGTCGAAG
TAGTCGATTGGGTTTGAATAGTTGCGAGCTCGAATACCCACTACCCAAAGAGCGTTCTAGCATTCTGTTCGAGCAAATATCCATTGCCCGTTGTGCCTTAGACATAGTTG
TCCATGGTCTAAAGGAGCTTTCTCGGGCTGCTTGGATATTAGGTTGCTTTGGAAGCGCTTTTGTGCGCAACGTGCGTAGCATGACGCGGAAGTCATGTGGGCTAGATGTG
CAGCGTGGCGGTAATTCATGTGTTGGTTTGTGCAGCATGGAGCGTAATTTATGCGTTGGGTGCGGAGGTAGAGAGCTTTTTAAAGAAGGCTATAGGTGGCGAGTGAGCAA
TGGGAGACACATATTTATAAATGAAGATCCTTGGCTCAATAGAATTGGCAGTAGGTTCCCTCTAGTAGTGGGCGAGCCCCTGAAAGGCAGAAGAGTTAGTGAGCTTCTCA
ACATCCATGGGGGGTGGGATGAAGATCTGATTCGAAGGCATTTTGTGGCTTCTGATGTGGTTGACATCCTTTCTATCCCTCTAGGTCGTGCGGAGGAGAAAGATGAGATA
GTGTGGAACCTTGACTCAAAAGGGAGGTTTAGTGTAAAAAGTGCCTACCATCTAGCCACCAAAATCCAAGAGATAGGGAAAGCATCAGGATCTTGCGAGGAGAGCCAAGT
TAGATGGAGGAATTTATGGAAGCTTAAAGATAATCCCGAGGGCGGAAATATGCCTTTGGAAAATTATCAAAAACCTTATCCCATCCAAGTTAAACCTCCTAAATAG
Protein sequenceShow/hide protein sequence
MPTAWIPSSARFRLCPSVFWLCFGSLRHHLGFPRRRSSRLGLNSCELEYPLPKERSSILFEQISIARCALDIVVHGLKELSRAAWILGCFGSAFVRNVRSMTRKSCGLDV
QRGGNSCVGLCSMERNLCVGCGGRELFKEGYRWRVSNGRHIFINEDPWLNRIGSRFPLVVGEPLKGRRVSELLNIHGGWDEDLIRRHFVASDVVDILSIPLGRAEEKDEI
VWNLDSKGRFSVKSAYHLATKIQEIGKASGSCEESQVRWRNLWKLKDNPEGGNMPLENYQKPYPIQVKPPK