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Spg017835 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017835
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDUF2431 domain-containing protein
Genome locationscaffold9:34351249..34351887
RNA-Seq ExpressionSpg017835
SyntenySpg017835
Gene Ontology termsGO:0070475 - rRNA base methylation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0070042 - rRNA (uridine-N3-)-methyltransferase activity (molecular function)
InterPro domainsIPR019446 - Domain of unknown function DUF2431


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK23208.1 uncharacterized protein E5676_scaffold142G002400 [Cucumis melo var. makuwa]5.1e-3372.38Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EK+I HYSSSH+ILLVGEGDFSFSACLATAF  ASN+VATSLDS + L+  YTH   NLK LEELG  V+H+VDATTMS+HP L+   FDRIVFNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FYFPE
        F + E
Subjt:  FYFPE

XP_008448100.1 PREDICTED: uncharacterized protein At4g26485-like [Cucumis melo]5.1e-3372.38Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EK+I HYSSSH+ILLVGEGDFSFSACLATAF  ASN+VATSLDS + L+  YTH   NLK LEELG  V+H+VDATTMS+HP L+   FDRIVFNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FYFPE
        F + E
Subjt:  FYFPE

XP_022139691.1 uncharacterized protein At4g26485-like [Momordica charantia]4.5e-3770.59Show/hide
Query:  MGDLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHH
        M DLN++       +K I HYSSSH ILLVGEGDFSFS CLAT FG A+NMVATSLDSKE LL  YTHV  NLK LEELGC V H+VDAT+MS+HP L H
Subjt:  MGDLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHH

Query:  TSFDRIVFNFPHAGFYFPE
         SFDR+VFNFPHAGF+F E
Subjt:  TSFDRIVFNFPHAGFYFPE

XP_028771540.1 uncharacterized protein At4g26485-like [Prosopis alba]1.1e-3269.52Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EKTI HYSS H+ILLVGEGDFSFS CLA AFG ASNMVATSLDS++ L   Y+  ++NL  LE LGC ++HEV+A TMS+HP L H  FDRIVFNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FYFPE
        F F E
Subjt:  FYFPE

XP_028789160.1 uncharacterized protein At4g26485-like [Prosopis alba]5.1e-3370.48Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EKTI HYSS H+ILLVGEGDFSFS CLA AFG ASNMVATSLDSK+ L   Y+  ++NL  LE LGC ++HEV+A TMS+HP L H  FDRIVFNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FYFPE
        F F E
Subjt:  FYFPE

TrEMBL top hitse value%identityAlignment
A0A0A0K734 DUF2431 domain-containing protein9.5e-3365.81Show/hide
Query:  DLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTS
        D+N+T       EK+I HYSSSH ILLVGEGDFSFSACLATAF  ASN++ATSLDS++ L+  Y     N+K LEELG  V+HEVDATTMS+HP LH   
Subjt:  DLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTS

Query:  FDRIVFNFPHAGFYFPE
        FDRIVFNFPHAGF + E
Subjt:  FDRIVFNFPHAGFYFPE

A0A151UG56 Uncharacterized protein At4g26480 family4.7e-3270.3Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EK I HYSS+HRILLVGEGDFSFS CLA AFG ASNMVATSLDSK+ L+  Y + + NL  LE LGC +VHEVD  TM EHP L H  FDRI++NFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  F
        F
Subjt:  F

A0A1S3BIC4 uncharacterized protein At4g26485-like2.5e-3372.38Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EK+I HYSSSH+ILLVGEGDFSFSACLATAF  ASN+VATSLDS + L+  YTH   NLK LEELG  V+H+VDATTMS+HP L+   FDRIVFNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FYFPE
        F + E
Subjt:  FYFPE

A0A5D3DIB6 DUF2431 domain-containing protein2.5e-3372.38Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        EK+I HYSSSH+ILLVGEGDFSFSACLATAF  ASN+VATSLDS + L+  YTH   NLK LEELG  V+H+VDATTMS+HP L+   FDRIVFNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FYFPE
        F + E
Subjt:  FYFPE

A0A6J1CDH1 uncharacterized protein At4g26485-like2.2e-3770.59Show/hide
Query:  MGDLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHH
        M DLN++       +K I HYSSSH ILLVGEGDFSFS CLAT FG A+NMVATSLDSKE LL  YTHV  NLK LEELGC V H+VDAT+MS+HP L H
Subjt:  MGDLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHH

Query:  TSFDRIVFNFPHAGFYFPE
         SFDR+VFNFPHAGF+F E
Subjt:  TSFDRIVFNFPHAGFYFPE

SwissProt top hitse value%identityAlignment
F4I1X0 Heavy metal-associated isoprenylated plant protein 411.7e-2656.86Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        E  + HYSS+H+ILLVGEGDFSFS  LAT FG ASN+ A+SLDS + ++  Y     NLK L+ LG +++H VDATT+  HP L +  FDR++FNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FY
        F+
Subjt:  FY

O94480 25S rRNA (uridine-N(3))-methyltransferase2.6e-1139.42Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACL----ATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNF
        E+ +  +  ++R LL+GEG+FSF+  L     ++ GF   ++ATS DSKE L   Y    E +  +E  G  V+HE+DAT +  H +L    FD I +NF
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACL----ATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNF

Query:  PHAG
        PH+G
Subjt:  PHAG

P0C8L4 Uncharacterized protein At4g264859.1e-2556.19Show/hide
Query:  VVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPH
        + EK I HYSS+H+ILLVGEG+FSFS CLA+AFG A N+ ATSLDS++ L   Y   ++N+  L+  GC + HEVD  TMS    L    +DRIVFNFPH
Subjt:  VVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPH

Query:  AGFYF
        AG  F
Subjt:  AGFYF

Q3UY23 Ferredoxin-fold anticodon-binding domain-containing protein 1 homolog6.0e-0841.57Show/hide
Query:  RILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        R+LLVGEG+FSF+A L      + ++ AT    +  L       +ENLK L E G  V   VD T +S         FDRI FNFPH G
Subjt:  RILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Q9BRP7 Ferredoxin-fold anticodon-binding domain-containing protein 12.7e-0839.36Show/hide
Query:  RILLVGEGDFSFSACLATAFGFASNMVATSLD-----SKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        R+LLVGEG+FSF+A L+     ++ + AT L      +++ L W      ENL+ L E G  V   VD T +++   LH   FD+I F FPH G
Subjt:  RILLVGEGDFSFSACLATAFGFASNMVATSLD-----SKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Arabidopsis top hitse value%identityAlignment
AT1G55790.1 Domain of unknown function (DUF2431)1.2e-2756.86Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        E  + HYSS+H+ILLVGEGDFSFS  LAT FG ASN+ A+SLDS + ++  Y     NLK L+ LG +++H VDATT+  HP L +  FDR++FNFPHAG
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

Query:  FY
        F+
Subjt:  FY

AT1G55800.1 Domain of unknown function (DUF2431)3.0e-2343.18Show/hide
Query:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEW---------------------------LLWTYTHVMENLKNLEELGCMVVHEV
        E  + HYSS H+ILLVGEGDFSFS  LAT FG ASN+ A+SLDS ++                           ++  Y +   NL+ L+ LG  ++H V
Subjt:  EKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEW---------------------------LLWTYTHVMENLKNLEELGCMVVHEV

Query:  DATTMSEHPRLHHTSFDRIVFNFPHAGFYFPE
        DATT+  HP L +  FDR++FNFPH GF+  E
Subjt:  DATTMSEHPRLHHTSFDRIVFNFPHAGFYFPE

AT5G25030.1 Domain of unknown function (DUF2431)5.0e-1848.48Show/hide
Query:  KTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG
        K ++ YS+  +IL+VGEG+FSFS  LA A G A+N+ A SLD +E L   Y +   N++ LE LGC VV  V+  +M    RL H  +D I+FNFPHAG
Subjt:  KTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAG

AT5G56060.1 Domain of unknown function (DUF2431)4.1e-2052Show/hide
Query:  INHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAGFYF
        +  YS+  +ILLVGEGDFSFS  LA  FG A+N+ ATSLD++E L   YT    N++ LE  GC VVH V+  +MS   RL    +DRI+FNFPH+G  F
Subjt:  INHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNFPHAGFYF

AT5G56075.1 Domain of unknown function (DUF2431)1.3e-1846.6Show/hide
Query:  TSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTS-FDRIVF
        T+V   K + HY++  +ILLVGEGDFSFS  LA AFG ASN+ ATSLD++  L   + +   N++ LE LGC VV+ V+  +M   P +  ++ +DR++F
Subjt:  TSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTS-FDRIVF

Query:  NFP
        NFP
Subjt:  NFP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATCTAAACAGTACAGAGTGTACTTCTGTCGTCGTCGAGAAGACGATAAATCATTACAGCAGCTCCCACAGAATACTCCTCGTCGGAGAAGGCGACTTCTCCTT
CTCCGCTTGCTTGGCCACAGCCTTCGGCTTTGCTTCTAATATGGTTGCCACTTCTCTCGACTCCAAAGAATGGTTATTGTGGACGTATACGCACGTTATGGAAAACTTGA
AAAACTTGGAGGAACTTGGCTGCATGGTGGTGCATGAAGTCGATGCAACAACGATGAGCGAACATCCACGTCTTCATCACACCTCATTCGATCGCATCGTTTTCAACTTT
CCACATGCTGGGTTTTACTTTCCAGAACAAATTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATCTAAACAGTACAGAGTGTACTTCTGTCGTCGTCGAGAAGACGATAAATCATTACAGCAGCTCCCACAGAATACTCCTCGTCGGAGAAGGCGACTTCTCCTT
CTCCGCTTGCTTGGCCACAGCCTTCGGCTTTGCTTCTAATATGGTTGCCACTTCTCTCGACTCCAAAGAATGGTTATTGTGGACGTATACGCACGTTATGGAAAACTTGA
AAAACTTGGAGGAACTTGGCTGCATGGTGGTGCATGAAGTCGATGCAACAACGATGAGCGAACATCCACGTCTTCATCACACCTCATTCGATCGCATCGTTTTCAACTTT
CCACATGCTGGGTTTTACTTTCCAGAACAAATTGAGTGA
Protein sequenceShow/hide protein sequence
MGDLNSTECTSVVVEKTINHYSSSHRILLVGEGDFSFSACLATAFGFASNMVATSLDSKEWLLWTYTHVMENLKNLEELGCMVVHEVDATTMSEHPRLHHTSFDRIVFNF
PHAGFYFPEQIE