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Spg017866 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017866
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:34416110..34420718
RNA-Seq ExpressionSpg017866
SyntenySpg017866
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0008233 - peptidase activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.7e-1347.06Show/hide
Query:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----
        T   PL TLSVL DNDAVVEIELPVPDTLPTS ESS S+SS+ L+                              G    +  DDVCWLHA+FR K    
Subjt:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----

Query:  -------LESCHHVPATQA
               LESCHHVPA  A
Subjt:  -------LESCHHVPATQA

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.0e-1343.51Show/hide
Query:  SLVFRAFWGVQVESEALCDIEPEAIWYRVHTGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHAIFRTKL--
        +L+ + F G++ +  ++  +  + I+        PL TLSVL DNDAV EIELPVPDTL TS ESS S+S S         +  DDVCWLHAIFR K+  
Subjt:  SLVFRAFWGVQVESEALCDIEPEAIWYRVHTGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHAIFRTKL--

Query:  ----------ESCHHVPATQAESGRDAGSFP
                   +  +   TQAESG DAGS+P
Subjt:  ----------ESCHHVPATQAESGRDAGSFP

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]7.2e-1248.11Show/hide
Query:  FSLVFRAFWGVQVESEALCDIE-PEAIWYRVHTGYI------PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHA
        F  V R  W ++V +  L ++E P      + TG +      PL  LSVL DND VVEIELPVPDT PTS ESS S+SSS         +  DDVCWLHA
Subjt:  FSLVFRAFWGVQVESEALCDIE-PEAIWYRVHTGYI------PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHA

Query:  IFRTKL
        +FR K+
Subjt:  IFRTKL

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.7e-1347.06Show/hide
Query:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----
        T   PL TLSVL DNDAVVEIELPVPDTLPTS ESS S+SS+ L+                              G    +  DDVCWLHA+FR K    
Subjt:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----

Query:  -------LESCHHVPATQA
               LESCHHVPA  A
Subjt:  -------LESCHHVPATQA

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-1264.38Show/hide
Query:  PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ---EGQRVSL-------EEDDVCWLHAIFRTK
        PL TLSVL DNDAVVEIELPVPDTLPTS ESS S+SS+ L+   E   V +        EDDVCWLHA+FR K
Subjt:  PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ---EGQRVSL-------EEDDVCWLHAIFRTK

TrEMBL top hitse value%identityAlignment
A0A5A7V9N3 Reverse transcriptase8.3e-1447.06Show/hide
Query:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----
        T   PL TLSVL DNDAVVEIELPVPDTLPTS ESS S+SS+ L+                              G    +  DDVCWLHA+FR K    
Subjt:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----

Query:  -------LESCHHVPATQA
               LESCHHVPA  A
Subjt:  -------LESCHHVPATQA

A0A5D3BNX1 Zf-CCHC domain-containing protein4.8e-1443.51Show/hide
Query:  SLVFRAFWGVQVESEALCDIEPEAIWYRVHTGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHAIFRTKL--
        +L+ + F G++ +  ++  +  + I+        PL TLSVL DNDAV EIELPVPDTL TS ESS S+S S         +  DDVCWLHAIFR K+  
Subjt:  SLVFRAFWGVQVESEALCDIEPEAIWYRVHTGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHAIFRTKL--

Query:  ----------ESCHHVPATQAESGRDAGSFP
                   +  +   TQAESG DAGS+P
Subjt:  ----------ESCHHVPATQAESGRDAGSFP

A0A5D3BQ75 Uncharacterized protein3.5e-1248.11Show/hide
Query:  FSLVFRAFWGVQVESEALCDIE-PEAIWYRVHTGYI------PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHA
        F  V R  W ++V +  L ++E P      + TG +      PL  LSVL DND VVEIELPVPDT PTS ESS S+SSS         +  DDVCWLHA
Subjt:  FSLVFRAFWGVQVESEALCDIE-PEAIWYRVHTGYI------PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHA

Query:  IFRTKL
        +FR K+
Subjt:  IFRTKL

A0A5D3DSY7 Putative Retrotransposon protein8.3e-1447.06Show/hide
Query:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----
        T   PL TLSVL DNDAVVEIELPVPDTLPTS ESS S+SS+ L+                              G    +  DDVCWLHA+FR K    
Subjt:  TGYIPLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ-----------------------------EGQRVSLEEDDVCWLHAIFRTK----

Query:  -------LESCHHVPATQA
               LESCHHVPA  A
Subjt:  -------LESCHHVPATQA

A0A5D3DX39 Reverse transcriptase4.5e-1264.38Show/hide
Query:  PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ---EGQRVSL-------EEDDVCWLHAIFRTK
        PL TLSVL DNDAVVEIELPVPDTLPTS ESS S+SS+ L+   E   V +        EDDVCWLHA+FR K
Subjt:  PLLTLSVLCDNDAVVEIELPVPDTLPTSVESSRSSSSSMLQ---EGQRVSL-------EEDDVCWLHAIFRTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCACTAAACGCGTCGGCAGAAGTTGTCTCTCTCGACGCAGTTAATGACCGCGTCGAGAGAGACAGTTTTAAATCGGTCTCTGCCAATGCTGTTAGTGACGGCGT
CGGCAAAGACGTCATCTCTCTCGACGCGTACAAGAAGGCGTCGAGAGAGAGGCTCTGTCGATGCCGCCTTGCCCTCTGTTCTGATTGCCACACTTTAGCTGAATATATCA
AAGATCAAGGTGATGCGTTTGATTCACGGCTCGCACGTCTGATGTGTAAGTTGAAAGGATTAAAATTCCTTTTGGCAGCGGAAGCAATCAAGAACGATCTCGTTTTAATT
TCAATTTTAGGAAAAACCGAACACTTACATGATTTGAATGTCAAATCACAGCGCAATGCTCCAAGGACTCCTCCAATCGACACTACCACTCGAGAGCACCCGCTACGCTC
TTGGATCTCTGAGATTGGCTTAGCACAGGATTTTCGAGCAAAGCAGGAAGATCTCTGGTTTTCTCTTGTTTTTAGAGCATTCTGGGGTGTACAAGTTGAATCTGAAGCTC
TATGTGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAATGTTACAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTTTGTTGGCT
TCACGCCATCTTCCGGACTAAGCTAGAGTCATGCCACCACGTACCAGCGACGCAGGCAGAATCAGGACGGGACGCAGGTTCCTTCCCACCTCTTCTTCTTCTTCAAGTCT
CCGGTGGGAAGAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCACTAAACGCGTCGGCAGAAGTTGTCTCTCTCGACGCAGTTAATGACCGCGTCGAGAGAGACAGTTTTAAATCGGTCTCTGCCAATGCTGTTAGTGACGGCGT
CGGCAAAGACGTCATCTCTCTCGACGCGTACAAGAAGGCGTCGAGAGAGAGGCTCTGTCGATGCCGCCTTGCCCTCTGTTCTGATTGCCACACTTTAGCTGAATATATCA
AAGATCAAGGTGATGCGTTTGATTCACGGCTCGCACGTCTGATGTGTAAGTTGAAAGGATTAAAATTCCTTTTGGCAGCGGAAGCAATCAAGAACGATCTCGTTTTAATT
TCAATTTTAGGAAAAACCGAACACTTACATGATTTGAATGTCAAATCACAGCGCAATGCTCCAAGGACTCCTCCAATCGACACTACCACTCGAGAGCACCCGCTACGCTC
TTGGATCTCTGAGATTGGCTTAGCACAGGATTTTCGAGCAAAGCAGGAAGATCTCTGGTTTTCTCTTGTTTTTAGAGCATTCTGGGGTGTACAAGTTGAATCTGAAGCTC
TATGTGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCTGTGACAACGATGCTGTCGTAGAGATCGAGCTC
CCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTCAATGTTACAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTTTGTTGGCT
TCACGCCATCTTCCGGACTAAGCTAGAGTCATGCCACCACGTACCAGCGACGCAGGCAGAATCAGGACGGGACGCAGGTTCCTTCCCACCTCTTCTTCTTCTTCAAGTCT
CCGGTGGGAAGAGATGA
Protein sequenceShow/hide protein sequence
MQSLNASAEVVSLDAVNDRVERDSFKSVSANAVSDGVGKDVISLDAYKKASRERLCRCRLALCSDCHTLAEYIKDQGDAFDSRLARLMCKLKGLKFLLAAEAIKNDLVLI
SILGKTEHLHDLNVKSQRNAPRTPPIDTTTREHPLRSWISEIGLAQDFRAKQEDLWFSLVFRAFWGVQVESEALCDIEPEAIWYRVHTGYIPLLTLSVLCDNDAVVEIEL
PVPDTLPTSVESSRSSSSSMLQEGQRVSLEEDDVCWLHAIFRTKLESCHHVPATQAESGRDAGSFPPLLLLQVSGGKR