CuGenDBv2

Gene ID	Spg017952
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein GIGANTEA-like isoform X1
Genome location	scaffold9:27607766..27609357
RNA-Seq Expression	Spg017952
Synteny	Spg017952
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009409 - response to cold (biological process) GO:0009637 - response to blue light (biological process) GO:0010218 - response to far red light (biological process) GO:0010378 - temperature compensation of the circadian clock (biological process) GO:0042542 - response to hydrogen peroxide (biological process) GO:0048578 - positive regulation of long-day photoperiodism, flowering (biological process) GO:0005654 - nucleoplasm (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR026211 - GIGANTEA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022935850.1 protein GIGANTEA-like isoform X5 [Cucurbita moschata]

1.3e-39

76.85

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Query:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM
        R N YSEQWALACGEILRILTHYNRPIYK EQ+NGE ERS SG +ATT DTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W  
Subjt:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM

Query:  VIVNKYGS
         ++ KY +
Subjt:  VIVNKYGS

XP_022976903.1 protein GIGANTEA-like isoform X1 [Cucurbita maxima]

2.2e-39

77.36

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +AT SDTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

XP_022976904.1 protein GIGANTEA-like isoform X2 [Cucurbita maxima]

2.2e-39

77.36

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +AT SDTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

XP_022976905.1 protein GIGANTEA-like isoform X3 [Cucurbita maxima]

9.8e-40

76.85

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Query:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM
        R N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +AT SDTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W  
Subjt:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM

Query:  VIVNKYGS
         ++ KY +
Subjt:  VIVNKYGS

XP_023535233.1 protein GIGANTEA-like [Cucurbita pepo subsp. pepo]

7.5e-40

76.85

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Query:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM
        R N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +ATT DTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W  
Subjt:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM

Query:  VIVNKYGS
         ++ KY +
Subjt:  VIVNKYGS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CQ08 protein GIGANTEA-like isoform X1

1.4e-39

78.3

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        NDYSEQWALACGEILRILTHYNRPIYK EQQN E ERS SGSLATTSD+ND  FVQ+PLQQE+KPIR LSPWITDILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

A0A6J1FBU6 protein GIGANTEA-like isoform X5

6.2e-40

76.85

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Query:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM
        R N YSEQWALACGEILRILTHYNRPIYK EQ+NGE ERS SG +ATT DTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W  
Subjt:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM

Query:  VIVNKYGS
         ++ KY +
Subjt:  VIVNKYGS

A0A6J1IKR9 protein GIGANTEA-like isoform X3

4.8e-40

76.85

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Query:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM
        R N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +AT SDTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W  
Subjt:  RVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHM

Query:  VIVNKYGS
         ++ KY +
Subjt:  VIVNKYGS

A0A6J1INH7 protein GIGANTEA-like isoform X1

1.1e-39

77.36

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +AT SDTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

A0A6J1IPZ2 protein GIGANTEA-like isoform X2

1.1e-39

77.36

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        N YSEQWALACGEILRILTHYNRPIYK+EQ+NGE ERS SG +AT SDTNDG FVQVPLQ E+KPIRPLSPWITDILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

SwissProt top hits

e value

%identity

Alignment

Q9AWL7 Protein GIGANTEA

2.6e-27

55.66

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Query:  DYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQ-EKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        +YSEQWALACGEILR+LTHYNRPI+K++ Q+ EAE S +   A++ ++ +      P  + ++KP+RPLSPWITDILLAAPLGIRSDYFR     W   +
Subjt:  DYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQ-EKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

Q9SQI2 Protein GIGANTEA

4.6e-32

62.26

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        NDYSEQWALACGEILRILTHYNRPIYK EQQNG+ ER+      T+           P Q E+KP+RPLSPWI+DILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

Arabidopsis top hits

e value

%identity

Alignment

AT1G22770.1 gigantea protein (GI)

3.3e-33

62.26

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Query:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI
        NDYSEQWALACGEILRILTHYNRPIYK EQQNG+ ER+      T+           P Q E+KP+RPLSPWI+DILLAAPLGIRSDYFR     W   +
Subjt:  NDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVI

Query:  VNKYGS
        + KY +
Subjt:  VNKYGS

Sequences

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CDS sequence

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ATGAGAGTTAACGATTATTCTGAACAATGGGCCCTTGCATGTGGGGAGATATTGCGGATCCTAACTCATTACAATCGTCCGATATACAAGATAGAACAACAAAATGGTGA
AGCTGAAAGAAGCCGTAGTGGCAGCCTTGCTACGACAAGTGACACCAATGATGGGGCATTTGTTCAAGTGCCTCTGCAACAAGAGAAGAAACCTATAAGACCTTTGTCCC
CTTGGATTACTGATATATTGCTTGCTGCACCATTGGGCATCAGAAGTGACTATTTCCGCTGTTTGGCCTTCTTATGGCACATGGTTATTGTGAATAAGTACGGTTCTCAT
CCTCATGATTGGTTCTTGGACAACGGCACTCCTAGAAACACTTAG

mRNA sequence

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Protein sequence

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MRVNDYSEQWALACGEILRILTHYNRPIYKIEQQNGEAERSRSGSLATTSDTNDGAFVQVPLQQEKKPIRPLSPWITDILLAAPLGIRSDYFRCLAFLWHMVIVNKYGSH
PHDWFLDNGTPRNT

Spg017952 (gene) of Sponge gourd (cylindrica) v1 genome