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Spg017959 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017959
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold9:29517230..29526308
RNA-Seq ExpressionSpg017959
SyntenySpg017959
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-0469.7Show/hide
Query:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR
        L+ L  WGQ++VGSWEHNH R NSL+PDFR SR
Subjt:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]7.3e-0673.68Show/hide
Query:  SESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR
        SESG  AD + L FWGQ+RV SWEHNHTR NSLLP FR
Subjt:  SESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.8e-0570.27Show/hide
Query:  ESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR
        ESG   D I L FWGQ+RVGSWEHNHTR NS +P FR
Subjt:  ESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR

TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]2.4e-0469.7Show/hide
Query:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR
        L+ L  WGQ++VGSWEHNH R NSL+PDFR SR
Subjt:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR

TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein1.1e-0469.7Show/hide
Query:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR
        L+ L  WGQ++VGSWEHNH R NSL+PDFR SR
Subjt:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR

A0A5A7SPG1 Pol protein9.6e-0442.47Show/hide
Query:  TLYFDTNAMIQRVRVGD---------MRVGVSYAMSESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR
        T  F   + I R+R+ +         MR        ESG   D I L F GQ+R+GSWEHN+TR N LLP FR
Subjt:  TLYFDTNAMIQRVRVGD---------MRVGVSYAMSESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR

A0A5A7U2P4 Integrase catalytic domain-containing protein3.5e-0673.68Show/hide
Query:  SESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR
        SESG  AD + L FWGQ+RV SWEHNHTR NSLLP FR
Subjt:  SESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR

A0A5D3C3J6 Gag/pol protein1.3e-0570.27Show/hide
Query:  ESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR
        ESG   D I L FWGQ+RVGSWEHNHTR NS +P FR
Subjt:  ESGLHADLISLPFWGQNRVGSWEHNHTRRNSLLPDFR

A0A5D3E3M6 Uncharacterized protein1.1e-0469.7Show/hide
Query:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR
        L+ L  WGQ++VGSWEHNH R NSL+PDFR SR
Subjt:  LISLPFWGQNRVGSWEHNHTRRNSLLPDFRVSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCCGCCTGCGAGTCGCCCTAGGAGCGATCACCCTACGGAGGGCTTGTGCATGGGATTCGGAACAACGCAAACTCCAAAAATGGATAGGGTTTCCTAGGGCCATTCC
CAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGTCGTCCTCTGCGATCTGAAAATGATGGGGATAAGGCTGGGTACCTTATCCTGGTGATACTATGGATACGACTCA
CTTTGTATTTTGATACAAACGCAATGATCCAACGCGTTCGTGTAGGGGACATGCGAGTGGGGGTATCCTATGCAATGAGTGAGAGTGGCCTGCACGCCGACTTAATAAGC
CTACCATTTTGGGGACAAAACCGAGTGGGGAGTTGGGAACATAATCACACAAGAAGGAATTCACTCCTTCCCGACTTCAGGGTAAGTAGATGTCCATTAGGTCCCACCGG
TAGCTCATTTAAGGCGTTGAGAGTTTTGTCCAAGAGAAGGGGCTGCTGTCATTCTGCAAGAAGTTTCCAAGAAGTTGGTCTTGCCGATCTTATCGTCAACGGTAGTGAGT
ATCTCTTAACCCCTAGACTCCCACCAGTCATTCTAGGCAAGGAGAATAGTAGGGAAGACTCTAGAGGTTGTCCAAGGAGCATAGGAGAAGAAAACACCACAAGGAGTTCC
TCATTTGTGAGCTACAAAGGAGCAGAAACGGATCTTTCTTGCTGCCCAAGGCGTAGAGCGTCGAGACGCTACGTCACACGTCAGGTTTTCTTGGAGCAAAAAATGTCGCA
GTGTCGCGACGCTGCGCGGACAGCGTCGCGACGCTACCGCGATTCTGGAATTTTCTTCACTGATCACCTAGCGTCGAGACGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCCGCCTGCGAGTCGCCCTAGGAGCGATCACCCTACGGAGGGCTTGTGCATGGGATTCGGAACAACGCAAACTCCAAAAATGGATAGGGTTTCCTAGGGCCATTCC
CAACATTAGCTCTTCCCTACGGTGGCATTGTTGGGGTCGTCCTCTGCGATCTGAAAATGATGGGGATAAGGCTGGGTACCTTATCCTGGTGATACTATGGATACGACTCA
CTTTGTATTTTGATACAAACGCAATGATCCAACGCGTTCGTGTAGGGGACATGCGAGTGGGGGTATCCTATGCAATGAGTGAGAGTGGCCTGCACGCCGACTTAATAAGC
CTACCATTTTGGGGACAAAACCGAGTGGGGAGTTGGGAACATAATCACACAAGAAGGAATTCACTCCTTCCCGACTTCAGGGTAAGTAGATGTCCATTAGGTCCCACCGG
TAGCTCATTTAAGGCGTTGAGAGTTTTGTCCAAGAGAAGGGGCTGCTGTCATTCTGCAAGAAGTTTCCAAGAAGTTGGTCTTGCCGATCTTATCGTCAACGGTAGTGAGT
ATCTCTTAACCCCTAGACTCCCACCAGTCATTCTAGGCAAGGAGAATAGTAGGGAAGACTCTAGAGGTTGTCCAAGGAGCATAGGAGAAGAAAACACCACAAGGAGTTCC
TCATTTGTGAGCTACAAAGGAGCAGAAACGGATCTTTCTTGCTGCCCAAGGCGTAGAGCGTCGAGACGCTACGTCACACGTCAGGTTTTCTTGGAGCAAAAAATGTCGCA
GTGTCGCGACGCTGCGCGGACAGCGTCGCGACGCTACCGCGATTCTGGAATTTTCTTCACTGATCACCTAGCGTCGAGACGCTAG
Protein sequenceShow/hide protein sequence
MRRLRVALGAITLRRACAWDSEQRKLQKWIGFPRAIPNISSSLRWHCWGRPLRSENDGDKAGYLILVILWIRLTLYFDTNAMIQRVRVGDMRVGVSYAMSESGLHADLIS
LPFWGQNRVGSWEHNHTRRNSLLPDFRVSRCPLGPTGSSFKALRVLSKRRGCCHSARSFQEVGLADLIVNGSEYLLTPRLPPVILGKENSREDSRGCPRSIGEENTTRSS
SFVSYKGAETDLSCCPRRRASRRYVTRQVFLEQKMSQCRDAARTASRRYRDSGIFFTDHLASRR