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Spg017964 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017964
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold9:29195022..29195893
RNA-Seq ExpressionSpg017964
SyntenySpg017964
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]5.2e-2059Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           F+VS+GS+GIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-2062.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +          +GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]9.1e-1762.64Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S         S+GIVRGDDVCWLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPGG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]3.7e-1857.84Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           F++S+ S+GIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
         G
Subjt:  GG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-2062.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +          +GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein2.5e-2059Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                           F+VS+GS+GIVRGDDVCWLHAVFR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW---------------------------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPG

A0A5A7VMG9 Reverse transcriptase5.0e-2162.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +          +GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein1.8e-1857.84Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGP
        MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +           F++S+ S+GIVRGDDVCWLHAVFRAK  GGP
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-----------FSVSIGSSGIVRGDDVCWLHAVFRAKLAGGP

Query:  GG
         G
Subjt:  GG

A0A5D3BP54 Gag/pol protein4.4e-1762.64Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES RS+S         S+GIVRGDDVCWLHA+FRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPGG

A0A5D3DX39 Reverse transcriptase5.0e-2162.63Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  + +          +GIVR DDVCWLHAVFRAK AGGPGG
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFSVSI--------GSSGIVRGDDVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCATCAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAG
CTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCATCAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAG
GG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFSVSIGSSGIVRGDDVCWLHAVFRAKLAGGPGG