; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg017990 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017990
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold9:26929153..26933653
RNA-Seq ExpressionSpg017990
SyntenySpg017990
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY61101.1 hypothetical protein CUMW_207140, partial [Citrus unshiu]9.1e-0626.18Show/hide
Query:  EWGQRCEWVHDYWLET-KTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAA
        +W  R +W+     E  ++ V  + A+  + +RV   + +  QL  N    E  V + TDA+ +     +G G ++   N Q+                A
Subjt:  EWGQRCEWVHDYWLET-KTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAA

Query:  EVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVG
        E  A+  GL++     V+   + SDS   + ++ N     S++Y  +L+IQ +   F+ VS  Y  R CN  A  LAK AL    + +W G
Subjt:  EVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVG

KAF3526751.1 hypothetical protein F2Q69_00048373 [Brassica cretica]7.0e-0632.81Show/hide
Query:  VLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMC
        VL+ TDA+ +  +L +G G  +    N+ C    ++      PL AE  AL   L     M++RR    SDSS+ IK +Q ++ ++ ++Y  ++ I ++ 
Subjt:  VLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMC

Query:  ALFESVSFHYVSRQCNRKADYLAKHALS
          F+ V+F ++SR+ NR+AD LAK+ L+
Subjt:  ALFESVSFHYVSRQCNRKADYLAKHALS

KAF3572023.1 hypothetical protein F2Q69_00063094 [Brassica cretica]2.4e-0633.59Show/hide
Query:  VLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMC
        VL+ TDA+ +  +L +G G  +    N+ C    ++      PL AE  AL   L     M++RR    SDSS+ IK +Q ++ ++ ++Y  +  I ++ 
Subjt:  VLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMC

Query:  ALFESVSFHYVSRQCNRKADYLAKHALS
          F+SV+F ++SR+ NR+AD LAK+ L+
Subjt:  ALFESVSFHYVSRQCNRKADYLAKHALS

KAG5395350.1 hypothetical protein IGI04_025313 [Brassica rapa subsp. trilocularis]3.1e-0630.23Show/hide
Query:  WLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLH
        W+  +T  +   A+A    R +  +TQ+ +         N +   TDAS       +G G I +  N  +    E  +     PL AE  A    LR   
Subjt:  WLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLH

Query:  TMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGS
        +      RVLSD+   ++ I +++ IT D++  I  I+ + A F S+SF +VSR  N +AD L++ ALSH S
Subjt:  TMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.2e-1129.12Show/hide
Query:  RCEWVHDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNAL
        +CEW+  + L++ +  Q    +++   R  S+    VQ    ++     + + TDA+C      + +G I+  ++  L  A  +  P    PL AE+  +
Subjt:  RCEWVHDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNAL

Query:  LHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSST
        L GL+           V SDS +AI++I+N+I+   D  +W+++IQ +   F  +SF + SRQCNR A  LAK  ++  S+T
Subjt:  LHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSST

TrEMBL top hitse value%identityAlignment
A0A2H5Q972 Uncharacterized protein (Fragment)4.4e-0626.18Show/hide
Query:  EWGQRCEWVHDYWLET-KTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAA
        +W  R +W+     E  ++ V  + A+  + +RV   + +  QL  N    E  V + TDA+ +     +G G ++   N Q+                A
Subjt:  EWGQRCEWVHDYWLET-KTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAA

Query:  EVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVG
        E  A+  GL++     V+   + SDS   + ++ N     S++Y  +L+IQ +   F+ VS  Y  R CN  A  LAK AL    + +W G
Subjt:  EVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVG

A0A5B6UDX5 Reverse transcriptase9.8e-0625.35Show/hide
Query:  WGQRCEWVHDYWLETKTAVQNSLAIASSGQRVMS--DSTQQVQLSINNTLFENE------VLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTR
        WG R   VH      K  ++++  +++  +R M+  D  Q+ +LS+N     N+        +F DA+ +     S  G++V      +   M +     
Subjt:  WGQRCEWVHDYWLETKTAVQNSLAIASSGQRVMS--DSTQQVQLSINNTLFENE------VLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTR

Query:  HKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVGDDL
          P  AE     H ++L+ +M  +  R+  DS   IK  Q +    S +   I  IQ++   F  + F ++ R  N+ A  +AK AL  G  T+++G ++
Subjt:  HKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVGDDL

Query:  ------ALTSRQR
              AL SR R
Subjt:  ------ALTSRQR

A0A6J1DX30 uncharacterized protein LOC1110248743.5e-1129.12Show/hide
Query:  RCEWVHDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNAL
        +CEW+  + L++ +  Q    +++   R  S+    VQ    ++     + + TDA+C      + +G I+  ++  L  A  +  P    PL AE+  +
Subjt:  RCEWVHDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNAL

Query:  LHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSST
        L GL+           V SDS +AI++I+N+I+   D  +W+++IQ +   F  +SF + SRQCNR A  LAK  ++  S+T
Subjt:  LHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSST

A0A6P6U043 Ribonuclease H4.9e-0531.78Show/hide
Query:  LMFTDASCSPLVLGSGYGVIVFQ-ANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVY-HWILKIQDM
        ++F D + S    GSG G+++      +L  A+    P  +    AE  ALL GLR+ H M +   RV SDS + +  ++ +     DV   ++ K+Q+ 
Subjt:  LMFTDASCSPLVLGSGYGVIVFQ-ANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVY-HWILKIQDM

Query:  CALFESVSFHYVSRQCNRKADYLAKHALS
         ALF++     V R  N++AD L+K A S
Subjt:  CALFESVSFHYVSRQCNRKADYLAKHALS

A0A6P6UCV9 Ribonuclease H1.3e-0527.42Show/hide
Query:  GQRCEWV-----HDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQ-ANNQLCGAMEVFEPTRHKP
        G+  +W      HD   + +TA++   A+A       S S  +       T  E   ++F D + S    GSG G+++      +L  A++   P  +  
Subjt:  GQRCEWV-----HDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQ-ANNQLCGAMEVFEPTRHKP

Query:  LAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVY-HWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALS
          AE   LL GLR+ H M +   RV SDS + +  ++ +     DV   ++ K+++  ALF++     V R  N++AD L+K A S
Subjt:  LAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVY-HWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein3.7e-0528Show/hide
Query:  LETKT-AVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASC--SPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHK---PLAAEVNALLHG
        +ET T AVQ++LA   S Q  +           + T   ++ L + DA+      + GSG+   VFQA +     +  F     +   PLAAE  A+   
Subjt:  LETKT-AVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASC--SPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHK---PLAAEVNALLHG

Query:  LRLLHTMQVRRA--RVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHAL
          +LH +Q+ R+   VLSDS   +  + +++++ ++++  +++I+ +   F S+SF ++ R  N  AD  AK +L
Subjt:  LRLLHTMQVRRA--RVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHAL

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.8e-0427.91Show/hide
Query:  NEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQD
        + V +FTDA+        G+G ++           +        PL AE  AL   L+   ++ + +  + SDS   I  I ++ + +++ Y  I  I +
Subjt:  NEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLRLLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQD

Query:  MCALFESVSFHYVSRQCNRKADYLAKHAL
        +   F  VSF +V R  NR AD LAK +L
Subjt:  MCALFESVSFHYVSRQCNRKADYLAKHAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTGGGGACAGAGATGCGAATGGGTGCATGACTATTGGTTAGAAACAAAAACGGCAGTGCAGAACAGCCTCGCTATAGCGTCGTCTGGGCAACGAGTGATGTCGGA
TTCTACCCAACAAGTTCAATTAAGCATCAATAATACGTTGTTTGAGAATGAAGTCTTGATGTTTACAGATGCCTCATGCTCTCCATTGGTCCTGGGATCGGGATATGGGG
TTATTGTTTTTCAGGCAAATAATCAACTTTGTGGTGCTATGGAAGTTTTCGAACCAACACGTCATAAGCCACTAGCGGCTGAAGTGAATGCACTATTACATGGCCTTCGT
TTGTTACACACAATGCAGGTCCGTCGTGCGCGTGTTTTATCAGATTCATCCATTGCAATCAAGATGATTCAGAATGACATTAATATCACCTCTGATGTGTATCATTGGAT
TTTAAAAATCCAAGATATGTGTGCACTATTTGAGTCAGTATCTTTCCATTATGTGTCTCGACAATGTAATAGGAAGGCAGACTATCTAGCAAAGCATGCTCTTTCTCATG
GTAGCTCTACGCTTTGGGTTGGCGATGATTTGGCGCTGACGTCGCGCCAGCGAACTCGTGTACCTGCTTCGTCCGCCGCCGTTCCAAGTGCCGTCGCCGCCGTTCCGCCG
ACCTGTGACCTCGCCGCCGCCTGGGTTCCACGCCGTTCAGTTCGCCGCCGCCTAGGTTCTATGTGTGAGCAATACGTCACGAACATAACTGATATCATCCAACAAACTAG
GAGGCTTACCGTTGTTGACACTGATTGGACACGTGCTCGTCGTAGACGCCGTCGACAACAGGCTGCAGACATTCCACAGCAGAATGAAGATGAAGAACCTCCTATAGTTG
ATGATGACACTTTAGCTCATCAAGTTCAGTCACTAGCAGATCAGACAGACATTGCTTCAAGTTCTGGTCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCAT
CATCAATCACACATGGAAGCGGCTCAACCTCGTCGTGGAGCTCGTCAGAGAAGACCACGCCGCTGTGGCACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTGGGGACAGAGATGCGAATGGGTGCATGACTATTGGTTAGAAACAAAAACGGCAGTGCAGAACAGCCTCGCTATAGCGTCGTCTGGGCAACGAGTGATGTCGGA
TTCTACCCAACAAGTTCAATTAAGCATCAATAATACGTTGTTTGAGAATGAAGTCTTGATGTTTACAGATGCCTCATGCTCTCCATTGGTCCTGGGATCGGGATATGGGG
TTATTGTTTTTCAGGCAAATAATCAACTTTGTGGTGCTATGGAAGTTTTCGAACCAACACGTCATAAGCCACTAGCGGCTGAAGTGAATGCACTATTACATGGCCTTCGT
TTGTTACACACAATGCAGGTCCGTCGTGCGCGTGTTTTATCAGATTCATCCATTGCAATCAAGATGATTCAGAATGACATTAATATCACCTCTGATGTGTATCATTGGAT
TTTAAAAATCCAAGATATGTGTGCACTATTTGAGTCAGTATCTTTCCATTATGTGTCTCGACAATGTAATAGGAAGGCAGACTATCTAGCAAAGCATGCTCTTTCTCATG
GTAGCTCTACGCTTTGGGTTGGCGATGATTTGGCGCTGACGTCGCGCCAGCGAACTCGTGTACCTGCTTCGTCCGCCGCCGTTCCAAGTGCCGTCGCCGCCGTTCCGCCG
ACCTGTGACCTCGCCGCCGCCTGGGTTCCACGCCGTTCAGTTCGCCGCCGCCTAGGTTCTATGTGTGAGCAATACGTCACGAACATAACTGATATCATCCAACAAACTAG
GAGGCTTACCGTTGTTGACACTGATTGGACACGTGCTCGTCGTAGACGCCGTCGACAACAGGCTGCAGACATTCCACAGCAGAATGAAGATGAAGAACCTCCTATAGTTG
ATGATGACACTTTAGCTCATCAAGTTCAGTCACTAGCAGATCAGACAGACATTGCTTCAAGTTCTGGTCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCAT
CATCAATCACACATGGAAGCGGCTCAACCTCGTCGTGGAGCTCGTCAGAGAAGACCACGCCGCTGTGGCACTTAG
Protein sequenceShow/hide protein sequence
MEWGQRCEWVHDYWLETKTAVQNSLAIASSGQRVMSDSTQQVQLSINNTLFENEVLMFTDASCSPLVLGSGYGVIVFQANNQLCGAMEVFEPTRHKPLAAEVNALLHGLR
LLHTMQVRRARVLSDSSIAIKMIQNDINITSDVYHWILKIQDMCALFESVSFHYVSRQCNRKADYLAKHALSHGSSTLWVGDDLALTSRQRTRVPASSAAVPSAVAAVPP
TCDLAAAWVPRRSVRRRLGSMCEQYVTNITDIIQQTRRLTVVDTDWTRARRRRRRQQAADIPQQNEDEEPPIVDDDTLAHQVQSLADQTDIASSSGHGDITQQDIDDVIH
HQSHMEAAQPRRGARQRRPRRCGT