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Spg017992 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg017992
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold9:26477997..26486017
RNA-Seq ExpressionSpg017992
SyntenySpg017992
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]5.8e-0664.44Show/hide
Query:  VSYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        V   ++ VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VSYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]9.9e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]4.0e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
TYK26313.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0460.47Show/hide
Query:  SYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
        S ++  VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L
Subjt:  SYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]5.2e-0763.04Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPL
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+C L
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPL
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class2.8e-0664.44Show/hide
Query:  VSYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        V   ++ VRVA  PTQYA+ FGDKTEW AG+  TQ+GIHSFP LG
Subjt:  VSYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein4.8e-0663.41Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIHSFP LG +
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein1.9e-0776.32Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW AG++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLG
A0A5A7VKV9 Gag/pol protein5.3e-0560.47Show/hide
Query:  SYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
        S ++  VRVA  PT+YA+ FGDKTEW  G++ TQ+GIHSFP L
Subjt:  SYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLL
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-942.5e-0763.04Show/hide
Query:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPL
        ++RVA  PTQYA+ F DKTEW AG++ TQ+GIH FP LG VD+C L
Subjt:  WVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCGGGGGTATCCTATGCAATGACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGAC
AACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCTGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTG
CAGAGCAATCAAGAATCATGTCCGTTGAAGTATTCAGAGTCGTCAACGAAGGCTCAAGCGTCGGCGATCACTGGAACGATGGTTACTTGAGTGTTAGCCGTTTCACCAGA
GTTGATGGTAGGAAATGTAAGATCTTCTTCAACTTTGATCAAACAGTTGATGAGTTCAAGGCAGTCAGATTCCACCTCAATTTTCAGTGGTTTTCCAGCACCCCCCCCCA
GCCGTTCGTTCAGCAAGCCGAGAGACCCAGCCCCCTCAACCGTTTTCGCGCCGCCGCCCTGCTCATGGATCGCACCGCCGCCGCCGTTGAGCCGCGTCGCAGCATCCTTC
GCAGCTCTCTCTCTCTCCTTCCGCTGTCTCTCCCTCTCTCTACAGTTATTTCTCCCTCTTCTTCTTGCCGTGGAAGTCGCCCAGCCCCTTGCCGTCGAGGAACACCGTTG
TGGGTTGCCACCGCTCGAGCTCCAGCCGCCGCCGTCCTTGTTCCGTTCACGTTGTCGCCGTGGAGTCGAGCGGGTCTCTCTGTCCGTATGGTTTTCGGCCAAGAAACCTC
GTGGATCTTGCGCGGACAGCAGCTCGAAGCCTTGCCTCCTCCGCGTTTCAGCCATAAAAGTCGTGGGTGTTCGATTAAGTTTGAAACACTTCAACTTGGATACCCATTGC
CCAATGAGCGTTCTAGCTCACTGGTTGTGGTTTGTAAAACCCGTCTAGCGTGGAAGCGGGACTGTTTGGGGGCTGAAAAGCCTTATCTGGAGTCGTTTGGCGAACACACA
TTGCCCGTTTTCGAGGTGCTTGTGGAGCTTGGTGCAAGTGTTGCCTCGTTGGTATTTGGAAGCGTGTTTTGTGTGCAGCGTGGTATCGAGGATGATCCGGACCTTGGTGG
CGAGGAGGAGAACTGCGAGGAAAGACTCCTAGAGTGTTGTTATGTTTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCGGGGGTATCCTATGCAATGACATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGGCTGGGGACATGAC
AACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCTGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTG
CAGAGCAATCAAGAATCATGTCCGTTGAAGTATTCAGAGTCGTCAACGAAGGCTCAAGCGTCGGCGATCACTGGAACGATGGTTACTTGAGTGTTAGCCGTTTCACCAGA
GTTGATGGTAGGAAATGTAAGATCTTCTTCAACTTTGATCAAACAGTTGATGAGTTCAAGGCAGTCAGATTCCACCTCAATTTTCAGTGGTTTTCCAGCACCCCCCCCCA
GCCGTTCGTTCAGCAAGCCGAGAGACCCAGCCCCCTCAACCGTTTTCGCGCCGCCGCCCTGCTCATGGATCGCACCGCCGCCGCCGTTGAGCCGCGTCGCAGCATCCTTC
GCAGCTCTCTCTCTCTCCTTCCGCTGTCTCTCCCTCTCTCTACAGTTATTTCTCCCTCTTCTTCTTGCCGTGGAAGTCGCCCAGCCCCTTGCCGTCGAGGAACACCGTTG
TGGGTTGCCACCGCTCGAGCTCCAGCCGCCGCCGTCCTTGTTCCGTTCACGTTGTCGCCGTGGAGTCGAGCGGGTCTCTCTGTCCGTATGGTTTTCGGCCAAGAAACCTC
GTGGATCTTGCGCGGACAGCAGCTCGAAGCCTTGCCTCCTCCGCGTTTCAGCCATAAAAGTCGTGGGTGTTCGATTAAGTTTGAAACACTTCAACTTGGATACCCATTGC
CCAATGAGCGTTCTAGCTCACTGGTTGTGGTTTGTAAAACCCGTCTAGCGTGGAAGCGGGACTGTTTGGGGGCTGAAAAGCCTTATCTGGAGTCGTTTGGCGAACACACA
TTGCCCGTTTTCGAGGTGCTTGTGGAGCTTGGTGCAAGTGTTGCCTCGTTGGTATTTGGAAGCGTGTTTTGTGTGCAGCGTGGTATCGAGGATGATCCGGACCTTGGTGG
CGAGGAGGAGAACTGCGAGGAAAGACTCCTAGAGTGTTGTTATGTTTCTTAG
Protein sequenceShow/hide protein sequence
MRAGVSYAMTWVRVANTPTQYAFLFGDKTEWEAGDMTTQEGIHSFPLLGEVDECPLGPPASSGEDQMVVFFVVAEQSRIMSVEVFRVVNEGSSVGDHWNDGYLSVSRFTR
VDGRKCKIFFNFDQTVDEFKAVRFHLNFQWFSSTPPQPFVQQAERPSPLNRFRAAALLMDRTAAAVEPRRSILRSSLSLLPLSLPLSTVISPSSSCRGSRPAPCRRGTPL
WVATARAPAAAVLVPFTLSPWSRAGLSVRMVFGQETSWILRGQQLEALPPPRFSHKSRGCSIKFETLQLGYPLPNERSSSLVVVCKTRLAWKRDCLGAEKPYLESFGEHT
LPVFEVLVELGASVASLVFGSVFCVQRGIEDDPDLGGEEENCEERLLECCYVS