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Spg018006 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018006
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGag/pol protein
Genome locationscaffold9:31208166..31214192
RNA-Seq ExpressionSpg018006
SyntenySpg018006
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025994.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]2.5e-0570Show/hide
Query:  SWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
        S VRVA  PTQYA+ FGDKTEW A +  TQ+GIHSFP LG
Subjt:  SWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
KAA0042877.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.4e-0560.87Show/hide
Query:  KLVDSESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
        K+      VRVA   TQYA+ FGDKTEW AE++ TQ+GIHSFP LG
Subjt:  KLVDSESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-0558.14Show/hide
Query:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEV
        + ++RVA  PTQYA+ F DKTEW A ++ TQ+GIHSFP LG +
Subjt:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEV
KAA0065950.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]3.8e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW A ++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
TYK27885.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]2.2e-0658.33Show/hide
Query:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEVDECPL
        + ++RVA  PTQYA+ F DKTEW A ++ TQ+GIH FP LG VD+C L
Subjt:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEVDECPL
TrEMBL top hitse value%identityAlignment
A0A5A7SJY0 Retrotransposon protein putative ty3-gypsy sub-class1.2e-0570Show/hide
Query:  SWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
        S VRVA  PTQYA+ FGDKTEW A +  TQ+GIHSFP LG
Subjt:  SWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
A0A5A7TKJ4 Gag/pol protein2.7e-0558.14Show/hide
Query:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEV
        + ++RVA  PTQYA+ F DKTEW A ++ TQ+GIHSFP LG +
Subjt:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEV
A0A5A7VFG5 Ty1-copia retrotransposon protein1.8e-0673.68Show/hide
Query:  VRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
        VRVA  PTQYA+ FGDKTEW A ++ TQ+GIHSFPLLG
Subjt:  VRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
A0A5D3C1P5 Gag-pol polyprotein7.0e-0660.87Show/hide
Query:  KLVDSESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
        K+      VRVA   TQYA+ FGDKTEW AE++ TQ+GIHSFP LG
Subjt:  KLVDSESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLG
A0A5D3DX33 Retrovirus-related pol polyprotein from transposon tnt 1-941.1e-0658.33Show/hide
Query:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEVDECPL
        + ++RVA  PTQYA+ F DKTEW A ++ TQ+GIH FP LG VD+C L
Subjt:  ESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEVDECPL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCTGCAACTCGTTGAAGATGAGAGAGAAAGAGATACCGAGCAAGAGAGAGAGATTGGAACGAGGGAGAAAACTTGTTCCACGTGTCTTTTCGTGCGCCGCTGCCG
TCGAAGGAAGGTGGCGCTGGCAGCAGTTGCTGTCGTCGGAGATGGCCGGAGGTGGAATGATGAATTTTCGGTGATCAGGACGCCAACACATGTCCTAGTCCAATACAGAT
ATATGTTGGACACGATTAGGCCAGATCGGAATGAAGATGATCTTATCCACCAACAAGCCGCTCCAGCGCAACAACAGTATTACCCACAGGAGCAACATGTTGATGAAGAT
GATCCTATCCAACAACAAACTGCCCCAACTCAGCACCAATATGACCCACGGGAGCAACATGTTGATCTCACTCAACAACATGATGATCCCCCATTGTTCCCATATGTGCC
TTCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGG
CTGAGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCAACAAAATTAATTTACGAACGG
TCCAATTGCTTCCACTGTAACGGAATTGGGAATTCCAATCCTTCACCTTCACCACCCCTGATGTTTGAACAGACGTTCCTAGAACTCTTCTCTTCCCCTGATTTCATGAC
GCAAACACCTACATTCTTCGGATCGTGGGAAGAAGGTCAATCATCACATACTTACCATCCTCCTGAAGAACAGTATGTGACGTATCGGAATCCAAGTCAGGGAATACACA
TCAGGGATGTAGGTGATACGACAAATATTAGAGGTCGGGGTGATCGAGGTCACGTAACTCATCGATCACGAGCTAGGCGCCATAGGACCCCATCTTCTAGTGAAGACCCC
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCTGCAACTCGTTGAAGATGAGAGAGAAAGAGATACCGAGCAAGAGAGAGAGATTGGAACGAGGGAGAAAACTTGTTCCACGTGTCTTTTCGTGCGCCGCTGCCG
TCGAAGGAAGGTGGCGCTGGCAGCAGTTGCTGTCGTCGGAGATGGCCGGAGGTGGAATGATGAATTTTCGGTGATCAGGACGCCAACACATGTCCTAGTCCAATACAGAT
ATATGTTGGACACGATTAGGCCAGATCGGAATGAAGATGATCTTATCCACCAACAAGCCGCTCCAGCGCAACAACAGTATTACCCACAGGAGCAACATGTTGATGAAGAT
GATCCTATCCAACAACAAACTGCCCCAACTCAGCACCAATATGACCCACGGGAGCAACATGTTGATCTCACTCAACAACATGATGATCCCCCATTGTTCCCATATGTGCC
TTCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATCATGGGTGAGAGTGGCCAATACGCCGACTCAATATGCCTTCCTTTTTGGGGACAAGACCGAGTGGGAGG
CTGAGGACATGACAACACAAGAAGGAATTCACTCCTTCCCACTTCTAGGAGAAGTAGATGAGTGTCCATTAGGTCCCCCTGCTAGCTCAACAAAATTAATTTACGAACGG
TCCAATTGCTTCCACTGTAACGGAATTGGGAATTCCAATCCTTCACCTTCACCACCCCTGATGTTTGAACAGACGTTCCTAGAACTCTTCTCTTCCCCTGATTTCATGAC
GCAAACACCTACATTCTTCGGATCGTGGGAAGAAGGTCAATCATCACATACTTACCATCCTCCTGAAGAACAGTATGTGACGTATCGGAATCCAAGTCAGGGAATACACA
TCAGGGATGTAGGTGATACGACAAATATTAGAGGTCGGGGTGATCGAGGTCACGTAACTCATCGATCACGAGCTAGGCGCCATAGGACCCCATCTTCTAGTGAAGACCCC
TAA
Protein sequenceShow/hide protein sequence
MLLQLVEDERERDTEQEREIGTREKTCSTCLFVRRCRRRKVALAAVAVVGDGRRWNDEFSVIRTPTHVLVQYRYMLDTIRPDRNEDDLIHQQAAPAQQQYYPQEQHVDED
DPIQQQTAPTQHQYDPREQHVDLTQQHDDPPLFPYVPSVGFYALKLVDSESWVRVANTPTQYAFLFGDKTEWEAEDMTTQEGIHSFPLLGEVDECPLGPPASSTKLIYER
SNCFHCNGIGNSNPSPSPPLMFEQTFLELFSSPDFMTQTPTFFGSWEEGQSSHTYHPPEEQYVTYRNPSQGIHIRDVGDTTNIRGRGDRGHVTHRSRARRHRTPSSSEDP