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Spg018007 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018007
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:31558504..31560043
RNA-Seq ExpressionSpg018007
SyntenySpg018007
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1447.11Show/hide
Query:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEED
        RPRGNR SLQT EL KT                 VEIELPVPDTLPTSAESS S+SS                YF ++VMSGLH +  +  G    +  D
Subjt:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEED

Query:  DVCWLHAISLTKLVGSLGGGV
        +VCWLHA+   K  G  GGGV
Subjt:  DVCWLHAISLTKLVGSLGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.0e-1349.17Show/hide
Query:  PRGNRPSLQTRELAKT---------------VEIELPVPDTLPTSAESSRSSSS-----YFPS-----------RVMSGLHPISAIQQGQQVSLEEDDVC
        PRGNR SLQTREL KT               V IELPVPD LPTSAESS S+SS     YF S           +VMS LH +  +  G    +  DDVC
Subjt:  PRGNRPSLQTRELAKT---------------VEIELPVPDTLPTSAESSRSSSS-----YFPS-----------RVMSGLHPISAIQQGQQVSLEEDDVC

Query:  WLHAISLTKLVGSLGGGVTT
        WLHA+   K VG  GGGVTT
Subjt:  WLHAISLTKLVGSLGGGVTT

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-1346.28Show/hide
Query:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV
        RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS                YF ++VMS LH + ++  G    +  DDV
Subjt:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV

Query:  CWLHAISLTKLVGSLGGGVTT
        CWLHA+   K VG  GGGVTT
Subjt:  CWLHAISLTKLVGSLGGGVTT

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1550.94Show/hide
Query:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGS
        +PRGN+PSLQT EL KT                 VEIEL VPDTLPTSAES  S+SSYF ++VMSGLH +  +  G    +  DDVC LH +   K  G 
Subjt:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGS

Query:  LGGGVT
         GGGVT
Subjt:  LGGGVT

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.0e-1346.28Show/hide
Query:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV
        RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS                YF ++VMS LH + ++  G    +  DDV
Subjt:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV

Query:  CWLHAISLTKLVGSLGGGVTT
        CWLHA+   K VG  GGGVTT
Subjt:  CWLHAISLTKLVGSLGGGVTT

TrEMBL top hitse value%identityAlignment
A0A5A7U9X4 DNA/RNA polymerases superfamily protein5.9e-1547.11Show/hide
Query:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEED
        RPRGNR SLQT EL KT                 VEIELPVPDTLPTSAESS S+SS                YF ++VMSGLH +  +  G    +  D
Subjt:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEED

Query:  DVCWLHAISLTKLVGSLGGGV
        +VCWLHA+   K  G  GGGV
Subjt:  DVCWLHAISLTKLVGSLGGGV

A0A5A7UT17 CCHC-type domain-containing protein5.0e-1449.17Show/hide
Query:  PRGNRPSLQTRELAKT---------------VEIELPVPDTLPTSAESSRSSSS-----YFPS-----------RVMSGLHPISAIQQGQQVSLEEDDVC
        PRGNR SLQTREL KT               V IELPVPD LPTSAESS S+SS     YF S           +VMS LH +  +  G    +  DDVC
Subjt:  PRGNRPSLQTRELAKT---------------VEIELPVPDTLPTSAESSRSSSS-----YFPS-----------RVMSGLHPISAIQQGQQVSLEEDDVC

Query:  WLHAISLTKLVGSLGGGVTT
        WLHA+   K VG  GGGVTT
Subjt:  WLHAISLTKLVGSLGGGVTT

A0A5A7V9N3 Reverse transcriptase5.0e-1446.28Show/hide
Query:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV
        RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS                YF ++VMS LH + ++  G    +  DDV
Subjt:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV

Query:  CWLHAISLTKLVGSLGGGVTT
        CWLHA+   K VG  GGGVTT
Subjt:  CWLHAISLTKLVGSLGGGVTT

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein6.9e-1650.94Show/hide
Query:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGS
        +PRGN+PSLQT EL KT                 VEIEL VPDTLPTSAES  S+SSYF ++VMSGLH +  +  G    +  DDVC LH +   K  G 
Subjt:  RPRGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSYFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGS

Query:  LGGGVT
         GGGVT
Subjt:  LGGGVT

A0A5D3DSY7 Putative Retrotransposon protein5.0e-1446.28Show/hide
Query:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV
        RGNR SLQ+ EL  T                 VEIELPVPDTLPTSAESS S+SS                YF ++VMS LH + ++  G    +  DDV
Subjt:  RGNRPSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSS----------------YFPSRVMSGLHPISAIQQGQQVSLEEDDV

Query:  CWLHAISLTKLVGSLGGGVTT
        CWLHA+   K VG  GGGVTT
Subjt:  CWLHAISLTKLVGSLGGGVTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGATTTCTGGACGAATCTGTTGGGCATCTCGTTTTCATCCCTTCAGGCCGAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTTATTTCCCAAGTCGAGTTATGTCAGGGCTGCACCCCATTTCAGCGATTCAGCAGG
GTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATATCCCTAACTAAGCTAGTAGGTAGTTTGGGAGGGGGTGTGACAACTTGA
mRNA sequenceShow/hide mRNA sequence
GGGATTTCTGGACGAATCTGTTGGGCATCTCGTTTTCATCCCTTCAGGCCGAGAGGAAATAGGCCGAGTCTACAGACCAGGGAACTAGCCAAGACTGTAGAGATCGAGCT
CCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGGTCAAGCTCCAGTTATTTCCCAAGTCGAGTTATGTCAGGGCTGCACCCCATTTCAGCGATTCAGCAGG
GTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATATCCCTAACTAAGCTAGTAGGTAGTTTGGGAGGGGGTGTGACAACTTGA
Protein sequenceShow/hide protein sequence
GISGRICWASRFHPFRPRGNRPSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSYFPSRVMSGLHPISAIQQGQQVSLEEDDVCWLHAISLTKLVGSLGGGVTT