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Spg018051 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018051
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold9:26850602..26852981
RNA-Seq ExpressionSpg018051
SyntenySpg018051
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039558.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1150.63Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE
        K  + +K+N L+++    S + K   NP  MSVMMAD+  +  MAEMERK+N LMKA +ERDHEI  L+ Q++ RETTE
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE

KAA0051508.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-1137.19Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR
        K  + +K+N L+++   TS + K   +P  MSV+MAD+  +  MAEMERK+N L+K V+E+DHEI  L+ Q++ RETTEL      + +D       + +
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR

Query:  SVETLHGQRRDAIAIPELSTR
        +V   + QR+ +I++  LS +
Subjt:  SVETLHGQRRDAIAIPELSTR

TYK24158.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-1137.19Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR
        K  + +K+N L+++   TS + K   +P  MSV+MAD+  +  MAEMERK+N L+K V+E+DHEI  L+ Q++ RETTEL      + +D       + +
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR

Query:  SVETLHGQRRDAIAIPELSTR
        +V   + QR+ +I++  LS +
Subjt:  SVETLHGQRRDAIAIPELSTR

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.2e-1154.43Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE
        K  + +K+N L+      S +     +P  MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RET E
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.2e-1154.43Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE
        K  + +K+N L+      S +     +P  MSVMMADV  +  MAEMERK+NLLMK VDERDHEIA LK Q+Q RET E
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE

TrEMBL top hitse value%identityAlignment
A0A5A7T9K9 Ty3-gypsy retrotransposon protein9.2e-1250.63Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE
        K  + +K+N L+++    S + K   NP  MSVMMAD+  +  MAEMERK+N LMKA +ERDHEI  L+ Q++ RETTE
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE

A0A5A7TV22 Ty3-gypsy retrotransposon protein3.5e-1148.78Show/hide
Query:  KFSKDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE
        +F K ++ +K+NLL+ +      + K   +P  +SVMMAD+  +  M EMERK NLLMK VDERDHEI  L+ Q+Q RET E
Subjt:  KFSKDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTE

A0A5A7U8B3 Ty3-gypsy retrotransposon protein7.0e-1237.19Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR
        K  + +K+N L+++   TS + K   +P  MSV+MAD+  +  MAEMERK+N L+K V+E+DHEI  L+ Q++ RETTEL      + +D       + +
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR

Query:  SVETLHGQRRDAIAIPELSTR
        +V   + QR+ +I++  LS +
Subjt:  SVETLHGQRRDAIAIPELSTR

A0A5D3DET6 Ty3-gypsy retrotransposon protein2.7e-1151.14Show/hide
Query:  GLFLHKFSKDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTEL
        GL   K  K  + ++DN LF + TP S       +   MSVMM DV  +  MAEMERK+NLLMK V ERDHEIA LK+Q++  ET EL
Subjt:  GLFLHKFSKDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTEL

A0A5D3DKU9 Ty3-gypsy retrotransposon protein7.0e-1237.19Show/hide
Query:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR
        K  + +K+N L+++   TS + K   +P  MSV+MAD+  +  MAEMERK+N L+K V+E+DHEI  L+ Q++ RETTEL      + +D       + +
Subjt:  KDKVAVKDNLLFESVTPTSEQPKDILNPHAMSVMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRR

Query:  SVETLHGQRRDAIAIPELSTR
        +V   + QR+ +I++  LS +
Subjt:  SVETLHGQRRDAIAIPELSTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTTGGAAAGGGGGTAGCGTCGCGACGCTATACGGCACAGCGTCGCGACGCTGTGACGTCATCGACTTGCCGGCCAAGAAATGGACAACGTCGCGACGCTGTCTTTACAG
CGTCTCGACGCTGTCTTTACAGCGTCTCGACGCTAGGCATTTTCCAGAACTTCCAGCTGCGGATTGGGCTTCTTTTCTTGGGCCAACTTCAATTCTTTTTGGGCTTTTTC
TTCATAAATTCTCTAAGGACAAGGTTGCAGTCAAAGACAACCTGTTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATATACTAAATCCTCATGCGATGTCT
GTCATGATGGCTGACGTAGACCATGATGAAAGGATGGCGGAGATGGAAAGAAAACTCAATCTCCTAATGAAGGCAGTTGATGAAAGAGATCATGAGATTGCCTATTTGAA
GAACCAGCTACAAAATCGAGAAACGACTGAGCTCCCAGCAGGCGTAGCGTCGAGACGCTCTGACGTCATCTTTTCTTGGGCTCCAAGACGTCGCAGCGTCGAGACGCTAC
ATGGACAGCGTCGCGACGCTATCGCGATTCCAGAACTCTCCACGCGGCTGCCTAGCGTCGGGACGCTCCAGGCTTAG
mRNA sequenceShow/hide mRNA sequence
GCTTGGAAAGGGGGTAGCGTCGCGACGCTATACGGCACAGCGTCGCGACGCTGTGACGTCATCGACTTGCCGGCCAAGAAATGGACAACGTCGCGACGCTGTCTTTACAG
CGTCTCGACGCTGTCTTTACAGCGTCTCGACGCTAGGCATTTTCCAGAACTTCCAGCTGCGGATTGGGCTTCTTTTCTTGGGCCAACTTCAATTCTTTTTGGGCTTTTTC
TTCATAAATTCTCTAAGGACAAGGTTGCAGTCAAAGACAACCTGTTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATATACTAAATCCTCATGCGATGTCT
GTCATGATGGCTGACGTAGACCATGATGAAAGGATGGCGGAGATGGAAAGAAAACTCAATCTCCTAATGAAGGCAGTTGATGAAAGAGATCATGAGATTGCCTATTTGAA
GAACCAGCTACAAAATCGAGAAACGACTGAGCTCCCAGCAGGCGTAGCGTCGAGACGCTCTGACGTCATCTTTTCTTGGGCTCCAAGACGTCGCAGCGTCGAGACGCTAC
ATGGACAGCGTCGCGACGCTATCGCGATTCCAGAACTCTCCACGCGGCTGCCTAGCGTCGGGACGCTCCAGGCTTAG
Protein sequenceShow/hide protein sequence
AWKGGSVATLYGTASRRCDVIDLPAKKWTTSRRCLYSVSTLSLQRLDARHFPELPAADWASFLGPTSILFGLFLHKFSKDKVAVKDNLLFESVTPTSEQPKDILNPHAMS
VMMADVDHDERMAEMERKLNLLMKAVDERDHEIAYLKNQLQNRETTELPAGVASRRSDVIFSWAPRRRSVETLHGQRRDAIAIPELSTRLPSVGTLQA