; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018068 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018068
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold9:26068266..26076488
RNA-Seq ExpressionSpg018068
SyntenySpg018068
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR009027 - Ribosomal protein L9/RNase H1, N-terminal
IPR011320 - Ribonuclease H1, N-terminal
IPR037056 - Ribonuclease H1, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9465329.1 hypothetical protein C3L33_02763, partial [Rhododendron williamsianum]2.9e-0531.93Show/hide
Query:  YRRLWGGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTY-NTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRS------
        Y+   GG+KFYVVF GR P +Y  W  CS QV  F G V+  Y   +    A+ T+   V +  P   +    DP G P   E  +   +L R       
Subjt:  YRRLWGGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTY-NTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRS------

Query:  ---SVRQLTIPNSTTGVHQ
           SV Q+ +P  +    Q
Subjt:  ---SVRQLTIPNSTTGVHQ

KAF7142433.1 hypothetical protein RHSIM_Rhsim05G0091300 [Rhododendron simsii]8.5e-0538.82Show/hide
Query:  GKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLY
        GKKFYVVF GR P +Y +W  CS QVN FSG V+N +   +    A+  Y   V+         Q  PP     LE  + P   Y
Subjt:  GKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLY

MBQ1972841.1 ribonuclease H family protein [Paraprevotella sp.]8.5e-0550Show/hide
Query:  GGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTT
        GGKKFYVV+ G  P +Y +W EC  Q+N F G VY S+   E  E AY +
Subjt:  GGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTT

SEJ15258.1 RNase H [Lachnospiraceae bacterium A10]1.1e-0448.21Show/hide
Query:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNR
        KK YVVF GR P +Y TW EC +QV+ FSG V+  Y  +E  E AY   +    NR
Subjt:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNR

WP_047044966.1 ribonuclease H family protein [Vibrio mexicanus]1.5e-0430Show/hide
Query:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRSSVRQLTIPNSTTGV
        KKFYVV+ GR P ++ TW EC +QV+ F+G  Y S+      E AY+   + V  +P+G     +    T   ++ +   +K++     +     S TG+
Subjt:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRSSVRQLTIPNSTTGV

TrEMBL top hitse value%identityAlignment
A0A1H6WE64 RNase H5.4e-0548.21Show/hide
Query:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNR
        KK YVVF GR P +Y TW EC +QV+ FSG V+  Y  +E  E AY   +    NR
Subjt:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNR

A0A1I3ZJB5 Ribonuclease HI2.0e-0452.17Show/hide
Query:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAY
        KK YVVF GR P +Y TW EC +QV+ FSG V+  Y  +E  E+A+
Subjt:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAY

A0A6A4MEB8 RING-type domain-containing protein (Fragment)1.4e-0531.93Show/hide
Query:  YRRLWGGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTY-NTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRS------
        Y+   GG+KFYVVF GR P +Y  W  CS QV  F G V+  Y   +    A+ T+   V +  P   +    DP G P   E  +   +L R       
Subjt:  YRRLWGGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTY-NTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRS------

Query:  ---SVRQLTIPNSTTGVHQ
           SV Q+ +P  +    Q
Subjt:  ---SVRQLTIPNSTTGVHQ

F3QTG8 Ribonuclease H1.2e-0435.56Show/hide
Query:  GGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAY------------TTYNTVVDNRPRGTIYYQRD-----PPGTP
        G KKFYVV+ G  P +Y +W +C  Q+N F G +Y S++  E  E AY            TT   V  N+P     Y+ D     PP  P
Subjt:  GGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAY------------TTYNTVVDNRPRGTIYYQRD-----PPGTP

W4Q2N9 Ribonuclease H1.6e-0440.68Show/hide
Query:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRG
        KK+YVV+ GR P +Y+TW EC +QV  F+G  + S+   E  E AY+   +    +P+G
Subjt:  KKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRG

SwissProt top hitse value%identityAlignment
Q07762 Ribonuclease H7.5e-0450Show/hide
Query:  FYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTT
        FYVV  GR   +Y TW +CS QV  FSG VY S+  L +   AY T
Subjt:  FYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTT

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCGACCTCGGCCTCTGTTTTGAAGCCCCATGCTCATGTGCTTTTCTTGCTTAGCCATTTATGTGGCGCACGTGGGTCGATCTCGACAAGATGTGCTCGGCCTCG
GCCTCGGCCAGGTGAGCTTAGCTCAGATGAAGTGCATGGGCTCAAGCCAGATGAGCGAGGTAGACTCGATAGTCCAGGCTCGCGTAATGTGATGGGCTCAAGCCAGATGA
GGCTCGCATGTAAGCGTGGGCACCAAGCTCGAAGGCTTAGGCTCGCATGTAGGCGTGGGCTCTATAGACTCGCAGGCGTGGGCACTATAGGCTTGCATGTAGGCGTGGAC
ACTATAGGCTCGCATGTAGGCGTGGGCTCTATAGGCTCGCATGTAGGCGTGGGCACTAAGCATGGAAGCTTAGGCTCGCATGTAGGCGTGGGCACTAAGCATGGAAGCTT
AGGCTCGCATGGAGGCGTGGGCGTTAAGCTCGAAGACTTAGGCTCGCAGGTGTTCAATCTCGCTTGCAATAACAGGATTGGCCTTGGTCACAACCATGGCTATGGTTGGT
CTCGGCCTTCGGCATGGCTCGGGTCGGCCTTGGCCTCAGCCTCGATCATATTTGGGGTCGGCCTCGGCCTCGGCCATATCTGGGGTCAGCTTCGGCCTTGGCCTCGAATA
GTCTGTCGTCTTTCCCTCAGCCTTCGCACTGTTCGTCTTGGAGACCTTTGCGCAAAACTCTTCTTTCGATTTTTGTGGATGATGGTTATTTTTCGGAAGGTTTTGTATCT
GGATTCTAGCTTTTCTTCTCCATCCTCTTATTTCTTAGGCGTTCGGAGGCGATTTAGGACTGAACCAAAGCGGACCCAGGGTGGCCACGGGCACCAAGAACAAACCGGAG
GCGGAAGGACTCGACCCGCGCAAGCGGGCCGACCGTGGGGGTTGGGCCAAGACTCGATACCTCCGGCCTTGGCCCGACCCTTTGGCCTGTTCTCCCTCCAAGATCCGTTT
CCTGGCTGTCTCCCTATGCTGGTATCGCGCTGTCCTCGTCAGCTCCTTGCATATCGGAGGTTATGGGGGGGGAAGAAGTTCTACGTCGTGTTCGCTGGGCGTATGCCCAA
TGTTTACATGACGTGGTACGAATGTTCAAGTCAAGTAAATAGCTTTAGTGGGATAGTATACAACTCATACAACATGCTTGAGGCCACAGAAGAAGCGTATACCACGTACA
ACACGGTTGTGGACAACCGTCCAAGAGGCACAATTTATTATCAGCGGGATCCTCCCGGAACTCCAGATTTTTTGGAATATGTTTCAACTCCAATGAAGCTCTACCGATCA
AGCGTTAGGCAATTGACTATCCCTAATTCAACTACTGGCGTTCACCAACTCATAATGATGAGTAAGGACGAGTTGAAGCGGAGTCGTCGGGAGGAGTTGTATGCAGAGTT
GGAGTTCATACCAAGAGTTTCTATGTGCTTGGCAGGGCACCTAGACAGTCCGGCCAACCCTGATCCTTCTCTTCTTCGTTCGGAGACTCGACGCTTCCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCGACCTCGGCCTCTGTTTTGAAGCCCCATGCTCATGTGCTTTTCTTGCTTAGCCATTTATGTGGCGCACGTGGGTCGATCTCGACAAGATGTGCTCGGCCTCG
GCCTCGGCCAGGTGAGCTTAGCTCAGATGAAGTGCATGGGCTCAAGCCAGATGAGCGAGGTAGACTCGATAGTCCAGGCTCGCGTAATGTGATGGGCTCAAGCCAGATGA
GGCTCGCATGTAAGCGTGGGCACCAAGCTCGAAGGCTTAGGCTCGCATGTAGGCGTGGGCTCTATAGACTCGCAGGCGTGGGCACTATAGGCTTGCATGTAGGCGTGGAC
ACTATAGGCTCGCATGTAGGCGTGGGCTCTATAGGCTCGCATGTAGGCGTGGGCACTAAGCATGGAAGCTTAGGCTCGCATGTAGGCGTGGGCACTAAGCATGGAAGCTT
AGGCTCGCATGGAGGCGTGGGCGTTAAGCTCGAAGACTTAGGCTCGCAGGTGTTCAATCTCGCTTGCAATAACAGGATTGGCCTTGGTCACAACCATGGCTATGGTTGGT
CTCGGCCTTCGGCATGGCTCGGGTCGGCCTTGGCCTCAGCCTCGATCATATTTGGGGTCGGCCTCGGCCTCGGCCATATCTGGGGTCAGCTTCGGCCTTGGCCTCGAATA
GTCTGTCGTCTTTCCCTCAGCCTTCGCACTGTTCGTCTTGGAGACCTTTGCGCAAAACTCTTCTTTCGATTTTTGTGGATGATGGTTATTTTTCGGAAGGTTTTGTATCT
GGATTCTAGCTTTTCTTCTCCATCCTCTTATTTCTTAGGCGTTCGGAGGCGATTTAGGACTGAACCAAAGCGGACCCAGGGTGGCCACGGGCACCAAGAACAAACCGGAG
GCGGAAGGACTCGACCCGCGCAAGCGGGCCGACCGTGGGGGTTGGGCCAAGACTCGATACCTCCGGCCTTGGCCCGACCCTTTGGCCTGTTCTCCCTCCAAGATCCGTTT
CCTGGCTGTCTCCCTATGCTGGTATCGCGCTGTCCTCGTCAGCTCCTTGCATATCGGAGGTTATGGGGGGGGAAGAAGTTCTACGTCGTGTTCGCTGGGCGTATGCCCAA
TGTTTACATGACGTGGTACGAATGTTCAAGTCAAGTAAATAGCTTTAGTGGGATAGTATACAACTCATACAACATGCTTGAGGCCACAGAAGAAGCGTATACCACGTACA
ACACGGTTGTGGACAACCGTCCAAGAGGCACAATTTATTATCAGCGGGATCCTCCCGGAACTCCAGATTTTTTGGAATATGTTTCAACTCCAATGAAGCTCTACCGATCA
AGCGTTAGGCAATTGACTATCCCTAATTCAACTACTGGCGTTCACCAACTCATAATGATGAGTAAGGACGAGTTGAAGCGGAGTCGTCGGGAGGAGTTGTATGCAGAGTT
GGAGTTCATACCAAGAGTTTCTATGTGCTTGGCAGGGCACCTAGACAGTCCGGCCAACCCTGATCCTTCTCTTCTTCGTTCGGAGACTCGACGCTTCCCATGA
Protein sequenceShow/hide protein sequence
MASTSASVLKPHAHVLFLLSHLCGARGSISTRCARPRPRPGELSSDEVHGLKPDERGRLDSPGSRNVMGSSQMRLACKRGHQARRLRLACRRGLYRLAGVGTIGLHVGVD
TIGSHVGVGSIGSHVGVGTKHGSLGSHVGVGTKHGSLGSHGGVGVKLEDLGSQVFNLACNNRIGLGHNHGYGWSRPSAWLGSALASASIIFGVGLGLGHIWGQLRPWPRI
VCRLSLSLRTVRLGDLCAKLFFRFLWMMVIFRKVLYLDSSFSSPSSYFLGVRRRFRTEPKRTQGGHGHQEQTGGGRTRPAQAGRPWGLGQDSIPPALARPFGLFSLQDPF
PGCLPMLVSRCPRQLLAYRRLWGGKKFYVVFAGRMPNVYMTWYECSSQVNSFSGIVYNSYNMLEATEEAYTTYNTVVDNRPRGTIYYQRDPPGTPDFLEYVSTPMKLYRS
SVRQLTIPNSTTGVHQLIMMSKDELKRSRREELYAELEFIPRVSMCLAGHLDSPANPDPSLLRSETRRFP