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Spg018077 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018077
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold9:27354370..27354974
RNA-Seq ExpressionSpg018077
SyntenySpg018077
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-1741.09Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE-------------FKDCYVPSPPVVDPTSREEYYATL
        +MKE++ G NI V+ N++SR ++LK+QY+AI EMMG A +GF WNEERKCIEAEK +F  WV+              +D  +P+P  ++P S E+  +T 
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE-------------FKDCYVPSPPVVDPTSREEYYATL

Query:  TGRVVGAGPSRTPQRRCLSIGNVTEVLEA
        T     AG SR  ++R    G++ +   A
Subjt:  TGRVVGAGPSRTPQRRCLSIGNVTEVLEA

KAA0060652.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.2e-1640.16Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG
        +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  W           +  +D  +P+P  ++P S E+  +T T 
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG

Query:  RVVGAGPSRTPQRRCLSIGNVTEVLEA
            AG SR  ++R   +G++ +   A
Subjt:  RVVGAGPSRTPQRRCLSIGNVTEVLEA

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1158.73Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE
        +MKE++   NI V+LN+ESR + LK+QY AI +MMG A + F WNEERKCIEAEK +F  WV+
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE

TYK02222.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]7.2e-1640.16Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG
        +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  W           +  +D  +P+P  ++P S E+  +T T 
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG

Query:  RVVGAGPSRTPQRRCLSIGNVTEVLEA
            AG SR  ++R   +G++ +   A
Subjt:  RVVGAGPSRTPQRRCLSIGNVTEVLEA

TYK05757.1 60S ribosomal protein L35 [Cucumis melo var. makuwa]2.6e-1361.29Show/hide
Query:  MKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE
        MKE++ G NI V+ N+ESR ++LK+QY  I EM+G A +GF WNEERKCIEAEK +FY WV+
Subjt:  MKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE

TrEMBL top hitse value%identityAlignment
A0A5A7U7F7 Retrotransposon protein1.1e-1741.09Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE-------------FKDCYVPSPPVVDPTSREEYYATL
        +MKE++ G NI V+ N++SR ++LK+QY+AI EMMG A +GF WNEERKCIEAEK +F  WV+              +D  +P+P  ++P S E+  +T 
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE-------------FKDCYVPSPPVVDPTSREEYYATL

Query:  TGRVVGAGPSRTPQRRCLSIGNVTEVLEA
        T     AG SR  ++R    G++ +   A
Subjt:  TGRVVGAGPSRTPQRRCLSIGNVTEVLEA

A0A5A7UXQ6 Putative nuclease HARBI13.5e-1640.16Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG
        +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  W           +  +D  +P+P  ++P S E+  +T T 
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG

Query:  RVVGAGPSRTPQRRCLSIGNVTEVLEA
            AG SR  ++R   +G++ +   A
Subjt:  RVVGAGPSRTPQRRCLSIGNVTEVLEA

A0A5D3BC95 Retrotransposon protein6.8e-1258.73Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE
        +MKE++   NI V+LN+ESR + LK+QY AI +MMG A + F WNEERKCIEAEK +F  WV+
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE

A0A5D3BTU3 Putative nuclease HARBI13.5e-1640.16Show/hide
Query:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG
        +MKE++   NI V+LN+ESR  +LK+QY  I EMMG A NGF  NE+RKCIEAEK +F  W           +  +D  +P+P  ++P S E+  +T T 
Subjt:  MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAW-----------VEFKDCYVPSPPVVDPTSREEYYATLTG

Query:  RVVGAGPSRTPQRRCLSIGNVTEVLEA
            AG SR  ++R   +G++ +   A
Subjt:  RVVGAGPSRTPQRRCLSIGNVTEVLEA

A0A5D3C1Q9 60S ribosomal protein L351.2e-1361.29Show/hide
Query:  MKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE
        MKE++ G NI V+ N+ESR ++LK+QY  I EM+G A +GF WNEERKCIEAEK +FY WV+
Subjt:  MKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGGAAAGATTGTCAGGCTGCAACATTGTAGTCAGCCTGAATATTGAGTCCAGGGCCAGGCTCCTCAAGAGACAGTACATGGCCATTGTAGAGATGATGGGACT
AGCCTACAATGGATTCAGATGGAACGAAGAGCGTAAATGCATCGAGGCTGAGAAGGATATTTTTTATGCATGGGTCGAGTTCAAAGATTGCTATGTCCCAAGTCCACCTG
TTGTTGATCCCACATCGAGGGAGGAGTACTATGCTACACTGACAGGCAGAGTTGTTGGTGCAGGACCATCTCGAACACCCCAGAGGAGATGTTTGTCTATAGGGAACGTG
ACTGAGGTCTTGGAGGCTGAGTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAAGGAAAGATTGTCAGGCTGCAACATTGTAGTCAGCCTGAATATTGAGTCCAGGGCCAGGCTCCTCAAGAGACAGTACATGGCCATTGTAGAGATGATGGGACT
AGCCTACAATGGATTCAGATGGAACGAAGAGCGTAAATGCATCGAGGCTGAGAAGGATATTTTTTATGCATGGGTCGAGTTCAAAGATTGCTATGTCCCAAGTCCACCTG
TTGTTGATCCCACATCGAGGGAGGAGTACTATGCTACACTGACAGGCAGAGTTGTTGGTGCAGGACCATCTCGAACACCCCAGAGGAGATGTTTGTCTATAGGGAACGTG
ACTGAGGTCTTGGAGGCTGAGTTTTAG
Protein sequenceShow/hide protein sequence
MMKERLSGCNIVVSLNIESRARLLKRQYMAIVEMMGLAYNGFRWNEERKCIEAEKDIFYAWVEFKDCYVPSPPVVDPTSREEYYATLTGRVVGAGPSRTPQRRCLSIGNV
TEVLEAEF