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Spg018078 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018078
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:26257770..26260188
RNA-Seq ExpressionSpg018078
SyntenySpg018078
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4278097.1 unnamed protein product [Prunus armeniaca]1.8e-0542.31Show/hide
Query:  QKDRDLDLVPLDPEIERTISRLR--RETKELIQMVDPNPPA-EPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        ++ + L L+PLDPEIERT+ +L   +  K++I +  P+P A EPKP+RDY  P      S I +  I+ANNFE+++ +
Subjt:  QKDRDLDLVPLDPEIERTISRLR--RETKELIQMVDPNPPA-EPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

KAF5481522.1 hypothetical protein F2P56_002164 [Juglans regia]1.4e-0545.21Show/hide
Query:  MQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELK
        M+  R  D+ P D EIERT+   R+  K+++ MVD    A P+ ++DY  PV     SGI    INANNFELK
Subjt:  MQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELK

KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]1.7e-0844.74Show/hide
Query:  MQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        M++ R  D++P+DPEIERT+  LRR   +++ M + +    P+ ++DY  PV  G  S I+  PINANNFELK  L
Subjt:  MQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]7.3e-0749.28Show/hide
Query:  DLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        +L+PLDPEI+RT    RR  + L+          PK IRDYF P     Q GI+  PIN NNFELK GL
Subjt:  DLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

XP_038906874.1 uncharacterized protein LOC120092758 [Benincasa hispida]2.1e-0642.86Show/hide
Query:  CMQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        CM++ +  +LV  DPE ER + R+ R+ +    ++     A  + IRDYF PV    Q GI   PINA+NFELK+GL
Subjt:  CMQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

TrEMBL top hitse value%identityAlignment
A0A6J5UQP9 Retrotrans_gag domain-containing protein8.7e-0642.31Show/hide
Query:  QKDRDLDLVPLDPEIERTISRLR--RETKELIQMVDPNPPA-EPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        ++ + L L+PLDPEIERT+ +L   +  K++I +  P+P A EPKP+RDY  P      S I +  I+ANNFE+++ +
Subjt:  QKDRDLDLVPLDPEIERTISRLR--RETKELIQMVDPNPPA-EPKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

A0A6P8BYD9 uncharacterized protein LOC1161910189.6e-0540.45Show/hide
Query:  IDHCMQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        I + M++ R  +L+PLDPEIERT+ RLRRE +     ++++M D +   +     + +RDY  P   G  S I    I ANNFELK  L
Subjt:  IDHCMQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

A0A6P8CDK6 Reverse transcriptase1.3e-0440.23Show/hide
Query:  HCMQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        + M++ R  +L+PLDPEIERT+ RLRRE +     ++++M D +   +     + +RDY  P   G  S I    I ANNFELK  L
Subjt:  HCMQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

A0A6P8D0M0 uncharacterized protein LOC1162004829.6e-0542.35Show/hide
Query:  MQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        M++ R  +L+PLDPEIERT+ RLRRE K     ++++M D +   +     + +RDY  P   G  S I    I ANNFELK  L
Subjt:  MQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

A0A6P8DAI3 uncharacterized protein LOC1162029731.3e-0440.23Show/hide
Query:  HCMQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL
        + M++ R  +L+PLDPEIERT+ RLRRE +     ++++M D +   +     + +RDY  P   G  S I    I ANNFELK  L
Subjt:  HCMQKDRDLDLVPLDPEIERTISRLRRETK-----ELIQMVDPNPPAE----PKPIRDYFHPVFQGQQSGIVYAPINANNFELKIGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGATGCTACACAATTTTCCTTTTATGTTTGAGGCGATTTAAGGGCAGCGTCTCAACATTGTACATAGCGTCTCGATGCTACCCTGTTTTCTATAAAAGGAATGC
GATTTCATCTGTGCAAGAGGAGTTCTTTTGGAGAGTTTTAACCCTAATTTCGATTCAAGACCTATTGGGAGAGCTAGAGGAAGAGTCGAGAACGGGATTCCGAGCAAGAG
CTCATGGAGATCGTGACGGGGACATTTCACCAACTCCTCGGTATTGGAATACCACCACAGGGAAACACCGGTATTCTCTGGGGATAAGGAGCCCAAGGCAGTGGAACCTA
CTTCTTGATTTAGGGAAACTGACTAAGAATCCTTGTGTGGGTGCACGTAGGCTGAAGCAAGGTCAAGGAGCGGGAATCAAGCTTGAAGACGTGGATATTGTGACGGAGAT
GTGCAGTTTCAATGGGATAGACCATTGTATGCAAAAAGATAGGGATTTGGACTTAGTACCTTTGGACCCCGAGATTGAGAGGACTATTAGTAGGCTTCGAAGGGAGACTA
AAGAACTTATCCAAATGGTTGATCCAAATCCACCTGCGGAGCCTAAGCCCATTCGTGACTATTTTCATCCCGTGTTTCAGGGGCAACAGTCGGGGATAGTCTATGCCCCG
ATCAATGCCAACAACTTTGAGCTGAAGATCGGTCTGAAGGATTGGAATTCAGTAATTCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCGATGCTACACAATTTTCCTTTTATGTTTGAGGCGATTTAAGGGCAGCGTCTCAACATTGTACATAGCGTCTCGATGCTACCCTGTTTTCTATAAAAGGAATGC
GATTTCATCTGTGCAAGAGGAGTTCTTTTGGAGAGTTTTAACCCTAATTTCGATTCAAGACCTATTGGGAGAGCTAGAGGAAGAGTCGAGAACGGGATTCCGAGCAAGAG
CTCATGGAGATCGTGACGGGGACATTTCACCAACTCCTCGGTATTGGAATACCACCACAGGGAAACACCGGTATTCTCTGGGGATAAGGAGCCCAAGGCAGTGGAACCTA
CTTCTTGATTTAGGGAAACTGACTAAGAATCCTTGTGTGGGTGCACGTAGGCTGAAGCAAGGTCAAGGAGCGGGAATCAAGCTTGAAGACGTGGATATTGTGACGGAGAT
GTGCAGTTTCAATGGGATAGACCATTGTATGCAAAAAGATAGGGATTTGGACTTAGTACCTTTGGACCCCGAGATTGAGAGGACTATTAGTAGGCTTCGAAGGGAGACTA
AAGAACTTATCCAAATGGTTGATCCAAATCCACCTGCGGAGCCTAAGCCCATTCGTGACTATTTTCATCCCGTGTTTCAGGGGCAACAGTCGGGGATAGTCTATGCCCCG
ATCAATGCCAACAACTTTGAGCTGAAGATCGGTCTGAAGGATTGGAATTCAGTAATTCCGTAA
Protein sequenceShow/hide protein sequence
MSRCYTIFLLCLRRFKGSVSTLYIASRCYPVFYKRNAISSVQEEFFWRVLTLISIQDLLGELEEESRTGFRARAHGDRDGDISPTPRYWNTTTGKHRYSLGIRSPRQWNL
LLDLGKLTKNPCVGARRLKQGQGAGIKLEDVDIVTEMCSFNGIDHCMQKDRDLDLVPLDPEIERTISRLRRETKELIQMVDPNPPAEPKPIRDYFHPVFQGQQSGIVYAP
INANNFELKIGLKDWNSVIP