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Spg018148 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018148
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationscaffold9:27717846..27720515
RNA-Seq ExpressionSpg018148
SyntenySpg018148
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]5.3e-0771.05Show/hide
Query:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
        GESG + DSI L F GQDR+GSWEHN+ RWN LLP FR
Subjt:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
KAA0026228.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0575.86Show/hide
Query:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
        + L  WGQD+VGSWEHNH RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]2.6e-0975.61Show/hide
Query:  ESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFRGGPQ
        ESG +ADS+ L FWGQDRV SWEHNH RWNSLLP FR  PQ
Subjt:  ESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFRGGPQ
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-0976.32Show/hide
Query:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
        GESG + DSI L FWGQDRVGSWEHNH RWNS +P FR
Subjt:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
TYK30723.1 hypothetical protein E5676_scaffold343G00550 [Cucumis melo var. makuwa]1.7e-0575.86Show/hide
Query:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
        + L  WGQD+VGSWEHNH RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein8.3e-0675.86Show/hide
Query:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
        + L  WGQD+VGSWEHNH RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
A0A5A7SPG1 Pol protein2.6e-0771.05Show/hide
Query:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
        GESG + DSI L F GQDR+GSWEHN+ RWN LLP FR
Subjt:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein1.2e-0975.61Show/hide
Query:  ESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFRGGPQ
        ESG +ADS+ L FWGQDRV SWEHNH RWNSLLP FR  PQ
Subjt:  ESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFRGGPQ
A0A5D3C3J6 Gag/pol protein1.2e-0976.32Show/hide
Query:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
        GESG + DSI L FWGQDRVGSWEHNH RWNS +P FR
Subjt:  GESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFR
A0A5D3E3M6 Uncharacterized protein8.3e-0675.86Show/hide
Query:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
        + L  WGQD+VGSWEHNH RWNSL+PDFR
Subjt:  ISLPFWGQDRVGSWEHNHARWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCTACTCGCTGACTCAATAAGCCTACCATTTTGGGGACAAGACAGAGTGGGGAGCTGGGAACATAATCACGCAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGGTGGACCTCAAACAGGTTGTTCATTAGAGGAGCATTGGGACTTAAGGATGCAGAGGCAACCCAGGGTCTTCTATAATCTCAAGGTTGTCTTAGAGATACTTT
TGGAAGAACTTGATGTGAACCAAGGAACATCTATTGTCATGCCTCAAGGTCCAATTACAAGGTCGAGAGGCAAAAAGCTACAACAAGCTTTAATCACCTATATATATTCA
AGTATGGTGAGCTCGACAAAGGAAGTTCAAGGAGATGTCGGACTCTTTCCTTGCATGATTTGTTTCTCCTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCTACTCGCTGACTCAATAAGCCTACCATTTTGGGGACAAGACAGAGTGGGGAGCTGGGAACATAATCACGCAAGATGGAATTCACTCCTTCCCGA
CTTTAGGGGTGGACCTCAAACAGGTTGTTCATTAGAGGAGCATTGGGACTTAAGGATGCAGAGGCAACCCAGGGTCTTCTATAATCTCAAGGTTGTCTTAGAGATACTTT
TGGAAGAACTTGATGTGAACCAAGGAACATCTATTGTCATGCCTCAAGGTCCAATTACAAGGTCGAGAGGCAAAAAGCTACAACAAGCTTTAATCACCTATATATATTCA
AGTATGGTGAGCTCGACAAAGGAAGTTCAAGGAGATGTCGGACTCTTTCCTTGCATGATTTGTTTCTCCTTATAG
Protein sequenceShow/hide protein sequence
MGESGLLADSISLPFWGQDRVGSWEHNHARWNSLLPDFRGGPQTGCSLEEHWDLRMQRQPRVFYNLKVVLEILLEELDVNQGTSIVMPQGPITRSRGKKLQQALITYIYS
SMVSSTKEVQGDVGLFPCMICFSL