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Spg018177 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018177
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionextensin-3-like
Genome locationscaffold9:29111938..29112498
RNA-Seq ExpressionSpg018177
SyntenySpg018177
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6592193.1 hypothetical protein SDJN03_14539, partial [Cucurbita argyrosperma subsp. sororia]3.4e-0447.64Show/hide
Query:  SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDS--P
        S++  L I + V  LSL ST AEGY+ +++PPPP   S  P V      SSPP         + Y SPP P   D     PPP     PPP  V  S  P
Subjt:  SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDS--P

Query:  PPPNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPP---PPPRRGYKPPPPPPRKYTLPPPPPPSPYY
        PPP KK  P P P+  P P PP+K  PPPP   PP PPPPKK P  PPPP KK P  PP   PP     K PPPP  +Y   PPPPPSPYY
Subjt:  PPPNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPP---PPPRRGYKPPPPPPRKYTLPPPPPPSPYY
XP_022976650.1 extensin-3-like [Cucurbita maxima]1.0e-0344.25Show/hide
Query:  SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDSPPP
        S++  L IA+ V  LS  ST AEGY+ +++PPPP           + Y S PP +         Y SPP P   D     PPP+    PP       PPP
Subjt:  SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDSPPP

Query:  PNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKY
        P KKP P P P+  P P PP+K  PPPP P    PPPP +K S PPPPPKK     PPPP   YK PPPPP  Y
Subjt:  PNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKY
TrEMBL top hitse value%identityAlignment
A0A6J1IK20 extensin-3-like4.8e-0444.25Show/hide
Query:  SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDSPPP
        S++  L IA+ V  LS  ST AEGY+ +++PPPP           + Y S PP +         Y SPP P   D     PPP+    PP       PPP
Subjt:  SLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSP---DHVIDLPPPDYDSLPPPDFVIDSPPP

Query:  PNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKY
        P KKP P P P+  P P PP+K  PPPP P    PPPP +K S PPPPPKK     PPPP   YK PPPPP  Y
Subjt:  PNKKPRPLPRPQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTCTTTAATGGCCTCCCTTGCTATTGCAATTTTAGTGGCAACTCTAAGCTTGCCATCTACAATTGCTGAAGGGTATGAACCTTTCTTTACCCCTCCACCCCC
TTCAGATTCTTCCAATGAGCCAACCGTGTCATCGATCGACTATGACTCGTCACCACCCGACTCTGTTATTATCGACTCACTACTACAAAATTACGACTCTCCTCCGTCAC
CCGACCATGTTATTGACTTGCCACCACCAGACTACGACTCTCTTCCACCACCCGATTTTGTTATCGACTCTCCACCTCCACCAAACAAGAAACCTCGTCCTCTTCCACGG
CCACAACCTCGTCCTCTTCCACGGCCACCCAAGAAGAATCAGCCTCCTCCTCCTCCACCGCCGCCTCCTCTGCCGCCACCACCAAAGAAGAAGCCGTCTCGACCCCCACC
ACCACCGAAGAAGAAGCCATCTCGTCCTCCGCCGCCACCTAGAAGGGGATACAAGCCACCTCCACCCCCACCGCGAAAGTACACATTGCCTCCTCCTCCTCCACCATCTC
CTTACTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCTTCTTTAATGGCCTCCCTTGCTATTGCAATTTTAGTGGCAACTCTAAGCTTGCCATCTACAATTGCTGAAGGGTATGAACCTTTCTTTACCCCTCCACCCCC
TTCAGATTCTTCCAATGAGCCAACCGTGTCATCGATCGACTATGACTCGTCACCACCCGACTCTGTTATTATCGACTCACTACTACAAAATTACGACTCTCCTCCGTCAC
CCGACCATGTTATTGACTTGCCACCACCAGACTACGACTCTCTTCCACCACCCGATTTTGTTATCGACTCTCCACCTCCACCAAACAAGAAACCTCGTCCTCTTCCACGG
CCACAACCTCGTCCTCTTCCACGGCCACCCAAGAAGAATCAGCCTCCTCCTCCTCCACCGCCGCCTCCTCTGCCGCCACCACCAAAGAAGAAGCCGTCTCGACCCCCACC
ACCACCGAAGAAGAAGCCATCTCGTCCTCCGCCGCCACCTAGAAGGGGATACAAGCCACCTCCACCCCCACCGCGAAAGTACACATTGCCTCCTCCTCCTCCACCATCTC
CTTACTATTAG
Protein sequenceShow/hide protein sequence
MGSSLMASLAIAILVATLSLPSTIAEGYEPFFTPPPPSDSSNEPTVSSIDYDSSPPDSVIIDSLLQNYDSPPSPDHVIDLPPPDYDSLPPPDFVIDSPPPPNKKPRPLPR
PQPRPLPRPPKKNQPPPPPPPPPLPPPPKKKPSRPPPPPKKKPSRPPPPPRRGYKPPPPPPRKYTLPPPPPPSPYY