; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018192 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018192
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsquamosa promoter-binding-like protein 13A
Genome locationscaffold9:30952443..30954172
RNA-Seq ExpressionSpg018192
SyntenySpg018192
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR036893 - SBP domain superfamily
IPR044817 - Squamosa promoter-binding-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042930.1 squamosa promoter-binding-like protein 13A [Cucumis melo var. makuwa]5.6e-3893.02Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

KAG6588893.1 Squamosa promoter-binding-like protein 13B, partial [Cucurbita argyrosperma subsp. sororia]1.0e-3685.71Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKATTLV
        D+DLSN K+YHRRH+VCD HSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLF+SSRDFLSNCK   +V
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKATTLV

XP_004148013.1 squamosa promoter-binding-like protein 13A [Cucumis sativus]2.8e-3791.86Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

XP_008450118.1 PREDICTED: squamosa promoter-binding-like protein 13A [Cucumis melo]5.6e-3893.02Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

XP_038877944.1 squamosa promoter-binding-like protein 13A [Benincasa hispida]6.2e-3790.7Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VV+VRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

TrEMBL top hitse value%identityAlignment
A0A0A0L895 SBP-type domain-containing protein1.3e-3791.86Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSS DFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

A0A1S3BNK6 squamosa promoter-binding-like protein 13A2.7e-3893.02Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

A0A5D3C4M7 Squamosa promoter-binding-like protein 13A2.7e-3893.02Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        DTDL+N KDYHRRH+VCDSHSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

A0A6J1EL17 squamosa promoter-binding-like protein 13A1.5e-3689.53Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK
        D+DLSN K+YHRRH+VCD HSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLF+SSRDFLSNCK
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCK

A0A6J1JR21 squamosa promoter-binding-like protein 13A5.6e-3673.04Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKATTLV--VDRSV--
        D+DLSN K+YHRRH+VCD HSKT VVMVRGEEKRFCQQ +RFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLF+SSRDFLSNCK   ++   D+ V  
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKATTLV--VDRSV--

Query:  --ERGREKGELRSRE
          E GR    +R+ E
Subjt:  --ERGREKGELRSRE

SwissProt top hitse value%identityAlignment
B9DI20 Squamosa promoter-binding-like protein 13A1.9e-2571.62Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVCD HSKT VV + G ++RFCQQ +RFH+L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

P0DI11 Squamosa promoter-binding-like protein 13B1.9e-2571.62Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVCD HSKT VV + G ++RFCQQ +RFH+L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

Q0J0K1 Squamosa promoter-binding-like protein 181.0e-2669.77Show/hide
Query:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKAT
        DLS  +DYHRRHKVC+ HSKT VV+V G E RFCQQ +RFH LGEFDE KRSCRKRLDGHNRRRRKPQ +S  MSS  F+++ + T
Subjt:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKAT

Q49I57 Teosinte glume architecture 15.6e-2565.12Show/hide
Query:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKAT
        DL   +DYHRRHKVC++HSKT VV+V G E RFCQQ +RFH L EFD  KRSCRKRLDGHNRRRRKPQP++  M+S  F+++ + T
Subjt:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKAT

Q6YZE8 Squamosa promoter-binding-like protein 163.3e-2568.29Show/hide
Query:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSN
        DLS  +DYHRRHKVC++HSKT +V+V G E RFCQQ +RFH L EFDE KRSCRKRLDGHNRRRRKPQP+   M+S  +L++
Subjt:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSN

Arabidopsis top hitse value%identityAlignment
AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein2.0e-2257.3Show/hide
Query:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKP-------QPESLFMSSRDFLSN
        DLS+ KDYH+RH+VC++HSKT VV+V G E+RFCQQ +RFH L EFD+ KRSCR+RL GHN RRRKP       +   L  +S+D + N
Subjt:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKP-------QPESLFMSSRDFLSN

AT1G76580.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein2.7e-2259.77Show/hide
Query:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL-----FMSSRDFLSN
        DLS  KDYHRRHKVC+ HSK    +V  + +RFCQQ +RFH L EFDE KRSCR+RLDGHNRRRRK QP+++      + +RD  SN
Subjt:  DLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL-----FMSSRDFLSN

AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.4e-2671.62Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVCD HSKT VV + G ++RFCQQ +RFH+L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

AT5G50570.2 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.4e-2671.62Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVCD HSKT VV + G ++RFCQQ +RFH+L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL

AT5G50670.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein1.4e-2671.62Show/hide
Query:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL
        D+D SN ++YH+RHKVCD HSKT VV + G ++RFCQQ +RFH+L EFDE KRSCRKRLDGHNRRRRKPQPE +
Subjt:  DTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGCATCTTTGGTACTCTTTTGCTCTGTTTCTCCTCATCGATTTCTTTCTTCAAAATACCATATTTTGACACTGACTTGAGCAATTTCAAGGATTATCATCGGCGCCATAA
GGTCTGCGATTCGCACTCAAAAACCCTTGTTGTGATGGTGAGGGGCGAGGAGAAACGATTCTGTCAACAGCGCAACAGGTTCCATTCGCTTGGTGAGTTTGATGAGGTGA
AGAGGAGTTGTAGAAAGAGGCTTGATGGGCACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAAAGCGACA
ACGCTTGTAGTGGACAGATCTGTAGAGAGAGGAAGGGAAAAGGGAGAGCTGAGGTCGAGAGAAAAACGAGATAGAGAGAGAGAGAAAAGAAAACCCACCGGTGGCGACGA
CAGAGCAGTCGGCGGCGTGGCGATTCACGGCAGCAAGAGGACGACGACGCGGCAGGAGGTGTGA
mRNA sequenceShow/hide mRNA sequence
AGCATCTTTGGTACTCTTTTGCTCTGTTTCTCCTCATCGATTTCTTTCTTCAAAATACCATATTTTGACACTGACTTGAGCAATTTCAAGGATTATCATCGGCGCCATAA
GGTCTGCGATTCGCACTCAAAAACCCTTGTTGTGATGGTGAGGGGCGAGGAGAAACGATTCTGTCAACAGCGCAACAGGTTCCATTCGCTTGGTGAGTTTGATGAGGTGA
AGAGGAGTTGTAGAAAGAGGCTTGATGGGCACAATCGGCGTAGGAGGAAGCCTCAGCCTGAATCCTTGTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAAAGCGACA
ACGCTTGTAGTGGACAGATCTGTAGAGAGAGGAAGGGAAAAGGGAGAGCTGAGGTCGAGAGAAAAACGAGATAGAGAGAGAGAGAAAAGAAAACCCACCGGTGGCGACGA
CAGAGCAGTCGGCGGCGTGGCGATTCACGGCAGCAAGAGGACGACGACGCGGCAGGAGGTGTGA
Protein sequenceShow/hide protein sequence
SIFGTLLLCFSSSISFFKIPYFDTDLSNFKDYHRRHKVCDSHSKTLVVMVRGEEKRFCQQRNRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPESLFMSSRDFLSNCKAT
TLVVDRSVERGREKGELRSREKRDREREKRKPTGGDDRAVGGVAIHGSKRTTTRQEV