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Spg018194 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018194
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationscaffold9:30904671..30913429
RNA-Seq ExpressionSpg018194
SyntenySpg018194
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037258.1 hypothetical protein SDJN02_00881 [Cucurbita argyrosperma subsp. argyrosperma]4.2e-0945.74Show/hide
Query:  LKLQCRTSQLTEPNLFCVPGIFLSALGHLEKKDALCERVFGGNISRSANRFTVLMLKCILLNAVVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +++  + SQL +  L C   IF SAL  LEK     ER                          VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  LKLQCRTSQLTEPNLFCVPGIFLSALGHLEKKDALCERVFGGNISRSANRFTVLMLKCILLNAVVDICQQCGDRGFVEALNYCKKCQTYPIHRW

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]4.2e-0948.57Show/hide
Query:  KSFSLWKSGRCRKVVIEERRGKRVHKVELELGASIWARDCLETATKVGNPCGFWRRRLDSAVLFFQVLEN
        K F +    + RK+ IEER G+   K+EL+ G S W RDCL  A    N   FW+RRL+ A++FFQVLEN
Subjt:  KSFSLWKSGRCRKVVIEERRGKRVHKVELELGASIWARDCLETATKVGNPCGFWRRRLDSAVLFFQVLEN

XP_022926190.1 uncharacterized protein LOC111433379 isoform X1 [Cucurbita moschata]2.1e-0890.32Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW

XP_023523968.1 uncharacterized protein LOC111788056 isoform X1 [Cucurbita pepo subsp. pepo]2.1e-0890.32Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW

XP_023523970.1 uncharacterized protein LOC111788056 isoform X2 [Cucurbita pepo subsp. pepo]2.1e-0890.32Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW

TrEMBL top hitse value%identityAlignment
A0A5D3CQQ0 Uncharacterized protein2.0e-0948.57Show/hide
Query:  KSFSLWKSGRCRKVVIEERRGKRVHKVELELGASIWARDCLETATKVGNPCGFWRRRLDSAVLFFQVLEN
        K F +    + RK+ IEER G+   K+EL+ G S W RDCL  A    N   FW+RRL+ A++FFQVLEN
Subjt:  KSFSLWKSGRCRKVVIEERRGKRVHKVELELGASIWARDCLETATKVGNPCGFWRRRLDSAVLFFQVLEN

A0A6J1CRB2 uncharacterized protein LOC111013528 isoform X23.8e-0879.41Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRWQTP
        +VDICQ CGDRGFVEALNYCKKCQ YP+HR+  P
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRWQTP

A0A6J1EE64 uncharacterized protein LOC111433379 isoform X11.0e-0890.32Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW

A0A6J1IWW2 uncharacterized protein LOC111480637 isoform X21.0e-0890.32Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW

A0A6J1J269 uncharacterized protein LOC111480637 isoform X11.0e-0890.32Show/hide
Query:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW
        +VDICQ+CGDRGFVEALNYCKKCQTYPIHR+
Subjt:  VVDICQQCGDRGFVEALNYCKKCQTYPIHRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGACGACGGCTACGATTTCAGAGGGAGACGTTGAAGAGAGGTGAAAACCCGAGGGGCATGTTTGTGGCGTGTTCACAGAAAAAACGTGCCAACAATGAAATCGT
GTACCCGAAAAGAGGCCTCTGCCATGGTAGTGAACTCTTAGGCCTTCTGAAGTTGCAGTGCAGGACCAGCCAACTGACAGAACCTAACCTGTTCTGTGTACCCGGAATTT
TCCTCTCTGCTCTTGGGCATCTGGAGAAGAAAGACGCTCTCTGCGAACGCGTTTTTGGCGGTAATATAAGTCGGTCTGCTAATCGCTTCACTGTATTGATGTTGAAATGC
ATATTGTTGAATGCTGTGGTTGATATTTGTCAGCAATGTGGAGACAGAGGTTTTGTTGAGGCTTTGAATTATTGTAAAAAATGTCAGACTTATCCTATTCATCGGTGGCA
AACTCCACCTAGCCTAGTCATGGTAGCCATTCAAGTTGCTTTAAGAACACTGATAGAGCTTGAGGAATGGGCTAATTTGGTGGCAATGCTGGATGCTTATTCCCCTTCTC
AGAACAATGACATTTTGCTGTGGAAGCCAGATAAAAATGGCTCCTTTTCGGCTAGTTTAGCTGTTGTTGCTCTTCAAAAAACAAAAATCTACTCGATGAAATCGTTCTCT
CTGTGGAAGAGTGGGCGTTGTAGGAAGGTGGTGATAGAGGAGAGAAGAGGGAAGAGAGTTCACAAAGTGGAGCTTGAGCTAGGGGCCTCTATATGGGCTCGTGACTGTTT
AGAGACAGCAACGAAAGTAGGGAACCCTTGTGGATTCTGGAGGAGGAGACTGGATTCTGCGGTGTTATTTTTTCAAGTATTAGAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCGACGACGGCTACGATTTCAGAGGGAGACGTTGAAGAGAGGTGAAAACCCGAGGGGCATGTTTGTGGCGTGTTCACAGAAAAAACGTGCCAACAATGAAATCGT
GTACCCGAAAAGAGGCCTCTGCCATGGTAGTGAACTCTTAGGCCTTCTGAAGTTGCAGTGCAGGACCAGCCAACTGACAGAACCTAACCTGTTCTGTGTACCCGGAATTT
TCCTCTCTGCTCTTGGGCATCTGGAGAAGAAAGACGCTCTCTGCGAACGCGTTTTTGGCGGTAATATAAGTCGGTCTGCTAATCGCTTCACTGTATTGATGTTGAAATGC
ATATTGTTGAATGCTGTGGTTGATATTTGTCAGCAATGTGGAGACAGAGGTTTTGTTGAGGCTTTGAATTATTGTAAAAAATGTCAGACTTATCCTATTCATCGGTGGCA
AACTCCACCTAGCCTAGTCATGGTAGCCATTCAAGTTGCTTTAAGAACACTGATAGAGCTTGAGGAATGGGCTAATTTGGTGGCAATGCTGGATGCTTATTCCCCTTCTC
AGAACAATGACATTTTGCTGTGGAAGCCAGATAAAAATGGCTCCTTTTCGGCTAGTTTAGCTGTTGTTGCTCTTCAAAAAACAAAAATCTACTCGATGAAATCGTTCTCT
CTGTGGAAGAGTGGGCGTTGTAGGAAGGTGGTGATAGAGGAGAGAAGAGGGAAGAGAGTTCACAAAGTGGAGCTTGAGCTAGGGGCCTCTATATGGGCTCGTGACTGTTT
AGAGACAGCAACGAAAGTAGGGAACCCTTGTGGATTCTGGAGGAGGAGACTGGATTCTGCGGTGTTATTTTTTCAAGTATTAGAGAATTAG
Protein sequenceShow/hide protein sequence
MDRRRLRFQRETLKRGENPRGMFVACSQKKRANNEIVYPKRGLCHGSELLGLLKLQCRTSQLTEPNLFCVPGIFLSALGHLEKKDALCERVFGGNISRSANRFTVLMLKC
ILLNAVVDICQQCGDRGFVEALNYCKKCQTYPIHRWQTPPSLVMVAIQVALRTLIELEEWANLVAMLDAYSPSQNNDILLWKPDKNGSFSASLAVVALQKTKIYSMKSFS
LWKSGRCRKVVIEERRGKRVHKVELELGASIWARDCLETATKVGNPCGFWRRRLDSAVLFFQVLEN