; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018207 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018207
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold3:5037419..5041157
RNA-Seq ExpressionSpg018207
SyntenySpg018207
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-1359.26Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        MST  R SAF+RLS+STSKK R S S FDRLK+T+DQ QR++ + + K F+E   D K+ S +PSRMKRK  + INTEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1360Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        ST  R SAF+RLS+STSKK R S S FDRLK+T+DQ QR++ +L+ K F+E   D K+ S +PSRMKRK  + INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

KAA0045440.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.8e-1457.14Show/hide
Query:  TRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSLKLLFECV
        TR S F+RLS+STSKK+R S S FDRLK+T+DQ QR++ +L+ K F E   D K+ S IPSRMKRK Y+ INTEG +  L + V
Subjt:  TRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSLKLLFECV

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1360.49Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        MST TR SAF+RLS+S SKK R S S FDRLK+T+DQ QR++ +L+ K F+E   D K+ S +PSR+KRK  I INTEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-1458.75Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        ST TR SAF+RLS+STSKK R S S FDR+K+ +DQ QR++ +L+ K F+E   D K+ S +PSRMKRK ++ INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein4.9e-1459.26Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        MST  R SAF+RLS+STSKK R S S FDRLK+T+DQ QR++ + + K F+E   D K+ S +PSRMKRK  + INTEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

A0A5A7TQK6 Retrotransposon gag protein3.8e-1457.14Show/hide
Query:  TRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSLKLLFECV
        TR S F+RLS+STSKK+R S S FDRLK+T+DQ QR++ +L+ K F E   D K+ S IPSRMKRK Y+ INTEG +  L + V
Subjt:  TRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSLKLLFECV

A0A5A7U974 Retrotransposon gag protein6.4e-1460.49Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        MST TR SAF+RLS+S SKK R S S FDRLK+T+DQ QR++ +L+ K F+E   D K+ S +PSR+KRK  I INTEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

A0A5D3BBF9 Gag protease polyprotein6.4e-1460Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        ST  R SAF+RLS+STSKK R S S FDRLK+T+DQ QR++ +L+ K F+E   D K+ S +PSRMKRK  + INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

A0A5D3BLW3 Retrotransposon gag protein2.9e-1458.75Show/hide
Query:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL
        ST TR SAF+RLS+STSKK R S S FDR+K+ +DQ QR++ +L+ K F+E   D K+ S +PSRMKRK ++ INTEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCA
ACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCAATGAAGTAGGTAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTATATTC
TCATAAATACAGAAGGTTCCTTGAAGCTATTGTTCGAGTGTGTCCTTCATGGCTTCACTTGTCTCAAGTTCAACTTCAAGTTTTCACCACTTCAAGTACATCAAGTTCAA
GTTCAAATTTTCCTCACTTCAAGTCATTCAAATTCAAGTAAAGAGCTTCACTTGTCTCAAGTTCAAGTCCAAGCTTTCATTACTTCGAGTGCTTCAAGGTCAAGTTCGGG
GTTTCGTCCGTTTCAAGTTCAAGTCCAGGGCTCTACTTGTCTCAAAGTTCAAGTTCAAGCTTTCATAACTTTAAGTACTATAAGTTCAAGTTTGGGGCTTCGCTCCTTTC
AAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGACGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCTTTCCTCACTGCATGTACTTCAGGTTCG
AGCTTTCATCGCTTCAAGTGCTTTAAGTTCAAGTTCGGGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTT
CGCTTGTTGGCGGGCTCGTTCGCTTCATCTTCAAACTCGGCGGTTGACGGCCTCGTTCGCTGCAAACTCGACGGTTGACGACCTCGTTTCATCTTCAAAGTTGGGTGCGG
TTGATGCCCTCGCTTCATTTTCAAAGTTGGTTGTGGTTGAAGCATCTGAGTTGAAAAGAGCTTCCATCCTCTCTTTTCTAATATACTCTCAAAGACCAGCGGTAGTTCAT
GTTAACGGAACCAATGACACAGCAACAATTCGACAATTCCCAACTCCAACAGCCTTGCTCCTTGCACCGACAACAACCCACGACCTCTTACGCGTTCTTCTGATAAAAAT
GGCTGATCTGCTGGTCGCTGGAACGTTGGCCATCGGTAGGGATCGTGGACTCGCTGCGGCCCAGAATTTCTCCATACAACTTGCTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCA
ACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCAATGAAGTAGGTAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTATATTC
TCATAAATACAGAAGGTTCCTTGAAGCTATTGTTCGAGTGTGTCCTTCATGGCTTCACTTGTCTCAAGTTCAACTTCAAGTTTTCACCACTTCAAGTACATCAAGTTCAA
GTTCAAATTTTCCTCACTTCAAGTCATTCAAATTCAAGTAAAGAGCTTCACTTGTCTCAAGTTCAAGTCCAAGCTTTCATTACTTCGAGTGCTTCAAGGTCAAGTTCGGG
GTTTCGTCCGTTTCAAGTTCAAGTCCAGGGCTCTACTTGTCTCAAAGTTCAAGTTCAAGCTTTCATAACTTTAAGTACTATAAGTTCAAGTTTGGGGCTTCGCTCCTTTC
AAGTTCAAGTTCGAGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGACGCTTCGCTCGTTTCAAGTTCAAGTTCGAGCTTTCCTCACTGCATGTACTTCAGGTTCG
AGCTTTCATCGCTTCAAGTGCTTTAAGTTCAAGTTCGGGGCTTCGCTCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTT
CGCTTGTTGGCGGGCTCGTTCGCTTCATCTTCAAACTCGGCGGTTGACGGCCTCGTTCGCTGCAAACTCGACGGTTGACGACCTCGTTTCATCTTCAAAGTTGGGTGCGG
TTGATGCCCTCGCTTCATTTTCAAAGTTGGTTGTGGTTGAAGCATCTGAGTTGAAAAGAGCTTCCATCCTCTCTTTTCTAATATACTCTCAAAGACCAGCGGTAGTTCAT
GTTAACGGAACCAATGACACAGCAACAATTCGACAATTCCCAACTCCAACAGCCTTGCTCCTTGCACCGACAACAACCCACGACCTCTTACGCGTTCTTCTGATAAAAAT
GGCTGATCTGCTGGTCGCTGGAACGTTGGCCATCGGTAGGGATCGTGGACTCGCTGCGGCCCAGAATTTCTCCATACAACTTGCTGGATGA
Protein sequenceShow/hide protein sequence
MSTSTRPSAFQRLSVSTSKKSRSSISVFDRLKVTDDQPQRKIDNLEVKLFNEVGSDKKLQSSIPSRMKRKFYILINTEGSLKLLFECVLHGFTCLKFNFKFSPLQVHQVQ
VQIFLTSSHSNSSKELHLSQVQVQAFITSSASRSSSGFRPFQVQVQGSTCLKVQVQAFITLSTISSSLGLRSFQVQVRAFLTSSTLSSSSTLRSFQVQVRAFLTACTSGS
SFHRFKCFKFKFGASLVSSSSSGFPHFKYSKFKFGGFACWRARSLHLQTRRLTASFAANSTVDDLVSSSKLGAVDALASFSKLVVVEASELKRASILSFLIYSQRPAVVH
VNGTNDTATIRQFPTPTALLLAPTTTHDLLRVLLIKMADLLVAGTLAIGRDRGLAAAQNFSIQLAG