; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018208 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018208
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:20657749..20661154
RNA-Seq ExpressionSpg018208
SyntenySpg018208
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-1274.55Show/hide
Query:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
        PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Subjt:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-1247.54Show/hide
Query:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT
        +S+  GFL F +      V+K N KL+  +       + V         GN   + S  EL+       T   PL TLSVLRDNDAVV+IELPVPDTLPT
Subjt:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT

Query:  SAESSSSSSSTWVELYIESVRI
        SAESS S+SSTW+ELY ESV +
Subjt:  SAESSSSSSSTWVELYIESVRI
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-1274.55Show/hide
Query:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
        PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Subjt:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]1.6e-1247.54Show/hide
Query:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT
        +S+  GFL F +      V+K N KL+  +       + V         GN   + S  EL+       T   PL TLSVLRDNDAVV+IELPVPDTLPT
Subjt:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT

Query:  SAESSSSSSSTWVELYIESVRI
        SAESS S+SSTW+ELY ESV +
Subjt:  SAESSSSSSSTWVELYIESVRI
TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-1181.63Show/hide
Query:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRI
        PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY+E V +
Subjt:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRI
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein2.3e-1274.55Show/hide
Query:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
        PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Subjt:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
A0A5A7V9N3 Reverse transcriptase7.8e-1347.54Show/hide
Query:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT
        +S+  GFL F +      V+K N KL+  +       + V         GN   + S  EL+       T   PL TLSVLRDNDAVV+IELPVPDTLPT
Subjt:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT

Query:  SAESSSSSSSTWVELYIESVRI
        SAESS S+SSTW+ELY ESV +
Subjt:  SAESSSSSSSTWVELYIESVRI
A0A5D3DR18 Gag/pol protein2.3e-1274.55Show/hide
Query:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
        PL TLSVLRDNDAVV+IELP+PDTLPTSAESS S+SSTW+ELY ESV +  +F +
Subjt:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVR
A0A5D3DSY7 Putative Retrotransposon protein7.8e-1347.54Show/hide
Query:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT
        +S+  GFL F +      V+K N KL+  +       + V         GN   + S  EL+       T   PL TLSVLRDNDAVV+IELPVPDTLPT
Subjt:  TSRFSGFLWFFEHSG---VYKLNPKLHFRVAEKLESVFSVFGAFLHKSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPT

Query:  SAESSSSSSSTWVELYIESVRI
        SAESS S+SSTW+ELY ESV +
Subjt:  SAESSSSSSSTWVELYIESVRI
A0A5D3DX39 Reverse transcriptase5.0e-1281.63Show/hide
Query:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRI
        PL TLSVLRDNDAVV+IELPVPDTLPTSAESS S+SSTW+ELY+E V +
Subjt:  PLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGGAGCGAATTCCGTCTTGCGAGATTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATACTGGCCACACTCACCCA
TGCAGATCAAATGATAATCTGGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGAGCACAGAATTTTCGTGCAAACCAGTAGGTTCTCTGGTT
TTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCATTTTAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGCAC
AAATCGGTTGGGAATGTCGTTTTCATTTCTTCAGATATTGAGCTTGAGGCTATATGGTACCGTGTGCACACATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGA
CAACGATGCTGTCGTAAAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTG
TCCGTATTGTAAATGTTTTTGTAAGGATTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGGAGCGAATTCCGTCTTGCGAGATTATGTCCCCAGCTATCTATTCGATCTTATCCCCAAAATGGTAGGCTTGTTGAGTCGGCGATACTGGCCACACTCACCCA
TGCAGATCAAATGATAATCTGGTATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGAGCACAGAATTTTCGTGCAAACCAGTAGGTTCTCTGGTT
TTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCATTTTAGGGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGCAC
AAATCGGTTGGGAATGTCGTTTTCATTTCTTCAGATATTGAGCTTGAGGCTATATGGTACCGTGTGCACACATGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGA
CAACGATGCTGTCGTAAAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGTTCAAGCTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTG
TCCGTATTGTAAATGTTTTTGTAAGGATTGGATAA
Protein sequenceShow/hide protein sequence
MGRSEFRLARLCPQLSIRSYPQNGRLVESAILATLTHADQMIIWYKQEFIVSSGLRTSYLEHRIFVQTSRFSGFLWFFEHSGVYKLNPKLHFRVAEKLESVFSVFGAFLH
KSVGNVVFISSDIELEAIWYRVHTCYIPLLTLSVLRDNDAVVKIELPVPDTLPTSAESSSSSSSTWVELYIESVRIVNVFVRIG