; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018216 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018216
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold3:18117174..18120326
RNA-Seq ExpressionSpg018216
SyntenySpg018216
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-3149.74Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVA-TKENQ
        K +P + + + F QP+Q + L E F ++F   H KE       +   +          EEVDN    +QRTSVFDR+KP TTR SVFQ +S+    +ENQ
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVA-TKENQ

Query:  CSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        C  ST TR SAF+ L++STSKK RPSTS F RLK+ NDQ +R+M +L+VK F E N+D K+HS + SRMKRK S+ INTEGSL V  RF
Subjt:  CSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-3151.05Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN
        K +P + + +   QP+Q + L E F ++F   H +E     T +   +          EEVDN    +QRTSVFDR+KP TTR SVFQ +SM ATK  EN
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        QC  ST  R SAF+RL++STSKK RPSTS F RLK+TNDQ +R+M +L+ K F E N+D K+HS + SRMKRK S+ INTEGSL V  RF
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.4e-3251.58Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN
        K +P +++ +KF QP++ + L E F ++F     E         T+  ++V       EEVDN    +QRTSVFDR+KP TTR SVFQ +SM ATK  EN
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        QC MST TR SAF+RL++S SKK RPSTS F RLK+TNDQ +R+M +L+ K F E N+D K++S + SR+KRK SI INTEGSL V  RF
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]5.5e-3151.58Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN
        K +P + + + F +P++L+ L E F ++F   H KE       + + +          EEV+N    +QRTSVFDR+KPSTTR SVFQ +SM ATK  EN
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDK-KLHSSISSRMKRKFSILINTEGSLKVLTR
        QC  STSTR SAF+RL +STSKK RPSTS+F  LK+TNDQ +R+M  L+ K+F E NND  K+HS +SSRMKRK S+ I+TEGSL V  R
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDK-KLHSSISSRMKRKFSILINTEGSLKVLTR

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3050.53Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATKE--N
        K +P + + + F QP++ + L E  S++F     E         T+  ++V       EEVDN    +QRTSVFDR+KP TTR SVFQ +SM ATKE  N
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATKE--N

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        QC  ST  R SAF+RL++STSKK RPSTS F RLK+TNDQ +R+M +L+ K F E N+D K+H+ + SRMKRK S+ INTEGSL V  RF
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein4.5e-3149.74Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVA-TKENQ
        K +P + + + F QP+Q + L E F ++F   H KE       +   +          EEVDN    +QRTSVFDR+KP TTR SVFQ +S+    +ENQ
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVA-TKENQ

Query:  CSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        C  ST TR SAF+ L++STSKK RPSTS F RLK+ NDQ +R+M +L+VK F E N+D K+HS + SRMKRK S+ INTEGSL V  RF
Subjt:  CSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

A0A5A7TQ06 Retrotransposon gag protein4.5e-3151.05Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN
        K +P + + +   QP+Q + L E F ++F   H +E     T +   +          EEVDN    +QRTSVFDR+KP TTR SVFQ +SM ATK  EN
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        QC  ST  R SAF+RL++STSKK RPSTS F RLK+TNDQ +R+M +L+ K F E N+D K+HS + SRMKRK S+ INTEGSL V  RF
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

A0A5A7U974 Retrotransposon gag protein4.1e-3251.58Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN
        K +P +++ +KF QP++ + L E F ++F     E         T+  ++V       EEVDN    +QRTSVFDR+KP TTR SVFQ +SM ATK  EN
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        QC MST TR SAF+RL++S SKK RPSTS F RLK+TNDQ +R+M +L+ K F E N+D K++S + SR+KRK SI INTEGSL V  RF
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

A0A5A7UA77 Retrotransposon gag protein2.6e-3151.58Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN
        K +P + + + F +P++L+ L E F ++F   H KE       + + +          EEV+N    +QRTSVFDR+KPSTTR SVFQ +SM ATK  EN
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTF---HRKEKENFATSYCIDV----------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATK--EN

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDK-KLHSSISSRMKRKFSILINTEGSLKVLTR
        QC  STSTR SAF+RL +STSKK RPSTS+F  LK+TNDQ +R+M  L+ K+F E NND  K+HS +SSRMKRK S+ I+TEGSL V  R
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDK-KLHSSISSRMKRKFSILINTEGSLKVLTR

A0A5A7UI09 Retrotransposon gag protein5.9e-3150.53Show/hide
Query:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATKE--N
        K +P + + + F QP++ + L E  S++F     E         T+  ++V       EEVDN    +QRTSVFDR+KP TTR SVFQ +SM ATKE  N
Subjt:  KLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFA------TSYCIDV-------EEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATKE--N

Query:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF
        QC  ST  R SAF+RL++STSKK RPSTS F RLK+TNDQ +R+M +L+ K F E N+D K+H+ + SRMKRK S+ INTEGSL V  RF
Subjt:  QCSMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGGTCCCAATCACGCTTCCGCTTAGGAATTACGGAATTCCAATCCTTCAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCA
ACCTCAACAATTGGTGATGTTAAATGAAACCTTCTCCAAAACTTTCCACAGAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATT
TTGAGAATGGTGAACAAAGGACTTCCGTCTTCGATCGCGTCAAGCCTTCAACTACTCGTCCTTCGGTATTTCAAACAATGAGTATGGTCGCGACAAAAGAAAATCAATGT
TCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTTATCGCCTCAAAGTAACAAACGA
TCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCTCGTCACGTATGAAGAGGAAGTTTTCTA
TTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTCACACGCTTCGATGCAGTTCGTTCTCTCCAAGTTCGAAGGTTCTCACATGTTTCGCTGCAGTTCTTTCTCTCCAAG
TTCGAAGGTTCTCACGCGTTTCGCTACAGTTCCTTCTCTCTAAGTTCGAGGGTTCTTACGTTACACACTAACGTGGTTCCTTCTCCAAGTTTGAAGGTTCTCCGCTGCAT
GCTCTTGCGGTTCTCCTTCTCCAAGTCCGAAGGTTTGCACGTGTTGTTATGTTGCTTTGCTGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGCTGCGCTGCTGCGCTA
CTTCCTTCTTTAAGTTCGAAGATTCCCACGTTGTGCTGTTGTGCTGCTACCTTCTCCAAGTTCGAAGTTCTAATGTTGCGCTGCTTTGCTGTTCCTTATCCAAGTTCGAA
GGTTCTGACGCTGCGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTGACGTTGCGCTGTTGCGCTGTTTCATTCACCAAGTTTGAAGGTTCTCACGTTGAGTTGCTTCGTTG
TCTCTTCTCCAAGTTCGAAGGTTCTCTAAGTTCGAAGGTTCTCAGGCTACGCTGCTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGCTGCT
TCCTTCTCCAAGTTCCAACGTTGCGCTTTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCCATGC
TGCTTCTTTGTTGCTTCAGTTCCTTCCCTCCAAACGAGTTTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCA
AGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTACAAGTGACGTTGATGACGACTG
TGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAATGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGGTCCCAATCACGCTTCCGCTTAGGAATTACGGAATTCCAATCCTTCAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCA
ACCTCAACAATTGGTGATGTTAAATGAAACCTTCTCCAAAACTTTCCACAGAAAGGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATT
TTGAGAATGGTGAACAAAGGACTTCCGTCTTCGATCGCGTCAAGCCTTCAACTACTCGTCCTTCGGTATTTCAAACAATGAGTATGGTCGCGACAAAAGAAAATCAATGT
TCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTTTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTTATCGCCTCAAAGTAACAAACGA
TCAACCTAAAAGAAAGATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATAGTAGCATCTCGTCACGTATGAAGAGGAAGTTTTCTA
TTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTCACACGCTTCGATGCAGTTCGTTCTCTCCAAGTTCGAAGGTTCTCACATGTTTCGCTGCAGTTCTTTCTCTCCAAG
TTCGAAGGTTCTCACGCGTTTCGCTACAGTTCCTTCTCTCTAAGTTCGAGGGTTCTTACGTTACACACTAACGTGGTTCCTTCTCCAAGTTTGAAGGTTCTCCGCTGCAT
GCTCTTGCGGTTCTCCTTCTCCAAGTCCGAAGGTTTGCACGTGTTGTTATGTTGCTTTGCTGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGGCTGCGCTGCTGCGCTA
CTTCCTTCTTTAAGTTCGAAGATTCCCACGTTGTGCTGTTGTGCTGCTACCTTCTCCAAGTTCGAAGTTCTAATGTTGCGCTGCTTTGCTGTTCCTTATCCAAGTTCGAA
GGTTCTGACGCTGCGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTGACGTTGCGCTGTTGCGCTGTTTCATTCACCAAGTTTGAAGGTTCTCACGTTGAGTTGCTTCGTTG
TCTCTTCTCCAAGTTCGAAGGTTCTCTAAGTTCGAAGGTTCTCAGGCTACGCTGCTGCGCTACTTCCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGCTGCT
TCCTTCTCCAAGTTCCAACGTTGCGCTTTTGTGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCCATGC
TGCTTCTTTGTTGCTTCAGTTCCTTCCCTCCAAACGAGTTTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCA
AGTGAAGTTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTACAAGTGACGTTGATGACGACTG
TGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAATGACTGA
Protein sequenceShow/hide protein sequence
MNRSQSRFRLGITEFQSFKKDPKKLQPKRKRSKKFSQPQQLVMLNETFSKTFHRKEKENFATSYCIDVEEVDNFENGEQRTSVFDRVKPSTTRPSVFQTMSMVATKENQC
SMSTSTRPSAFQRLNVSTSKKSRPSTSVFYRLKVTNDQPKRKMDNLEVKLFDEVNNDKKLHSSISSRMKRKFSILINTEGSLKVLTRFDAVRSLQVRRFSHVSLQFFLSK
FEGSHAFRYSSFSLSSRVLTLHTNVVPSPSLKVLRCMLLRFSFSKSEGLHVLLCCFAAVPSPSSKVLRLRCCATSFFKFEDSHVVLLCCYLLQVRSSNVALLCCSLSKFE
GSDAALLPSPSLKVLTLRCCAVSFTKFEGSHVELLRCLFSKFEGSLSSKVLRLRCCATSFFKFEGSHVALLCCFLLQVPTLRFCAASFSKFEGSDVALLPSPSSKVLMPC
CFFVASVPSLQTSLVTTPAGNYSHQSDWSRQVVKSLQVKLMTTVVTTPAGNYSHQSDWSRQVVKSLQVTLMTTVVTTPAGNYSHQND