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Spg018229 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018229
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:5650431..5651506
RNA-Seq ExpressionSpg018229
SyntenySpg018229
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]4.0e-1554Show/hide
Query:  PRENRLSLQTRELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFI---------VNVV------GQQVSLEEDDVRWLHAIFRTKLADGPGGGV
        PR NR +L T +L KTVEIELPVPDTLPTSAESSKS  STW+ELY ES  +         V V       G    +  DD+ WLHA+F  K A  PGGGV
Subjt:  PRENRLSLQTRELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFI---------VNVV------GQQVSLEEDDVRWLHAIFRTKLADGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.3e-1550.42Show/hide
Query:  PRENRLSLQTRELTKT---------------VEIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR
        PR NRLSLQTREL KT               V IELPVPD LPTSAESS S  STW+ELY                 SE   + NV VG    +  DDV 
Subjt:  PRENRLSLQTRELTKT---------------VEIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR

Query:  WLHAIFRTKLADGPGGGVT
        WLHA+FR K   GPGGGVT
Subjt:  WLHAIFRTKLADGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1460.76Show/hide
Query:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP
        R+    VEIELPVPDTLPTSAESS+S  STW+ELY E F  V +      + EDDV WLHA+FR K A GPGGGV   P
Subjt:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.1e-1550.42Show/hide
Query:  PRENRLSLQTRELTKTV---------------EIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR
        PR NRLSLQT EL KTV                IELPVPDTLPTSAESS S  STW+ELY                 SE   + NV VG    +  DDV 
Subjt:  PRENRLSLQTRELTKTV---------------EIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR

Query:  WLHAIFRTKLADGPGGGVT
        WLHA+FR K   GPGGGVT
Subjt:  WLHAIFRTKLADGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.0e-1460.76Show/hide
Query:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP
        R+    VEIELPVPDTLPTSAESS+S  STW+ELY E F  V +      + EDDV WLHA+FR K A GPGGGV   P
Subjt:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.9e-1554Show/hide
Query:  PRENRLSLQTRELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFI---------VNVV------GQQVSLEEDDVRWLHAIFRTKLADGPGGGV
        PR NR +L T +L KTVEIELPVPDTLPTSAESSKS  STW+ELY ES  +         V V       G    +  DD+ WLHA+F  K A  PGGGV
Subjt:  PRENRLSLQTRELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFI---------VNVV------GQQVSLEEDDVRWLHAIFRTKLADGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein1.1e-1550.42Show/hide
Query:  PRENRLSLQTRELTKT---------------VEIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR
        PR NRLSLQTREL KT               V IELPVPD LPTSAESS S  STW+ELY                 SE   + NV VG    +  DDV 
Subjt:  PRENRLSLQTRELTKT---------------VEIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR

Query:  WLHAIFRTKLADGPGGGVT
        WLHA+FR K   GPGGGVT
Subjt:  WLHAIFRTKLADGPGGGVT

A0A5A7VMG9 Reverse transcriptase9.6e-1560.76Show/hide
Query:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP
        R+    VEIELPVPDTLPTSAESS+S  STW+ELY E F  V +      + EDDV WLHA+FR K A GPGGGV   P
Subjt:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP

A0A5D3CJX3 CCHC-type domain-containing protein1.5e-1550.42Show/hide
Query:  PRENRLSLQTRELTKTV---------------EIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR
        PR NRLSLQT EL KTV                IELPVPDTLPTSAESS S  STW+ELY                 SE   + NV VG    +  DDV 
Subjt:  PRENRLSLQTRELTKTV---------------EIELPVPDTLPTSAESSKSTFSTWVELY-----------------SESFFIVNV-VGQQVSLEEDDVR

Query:  WLHAIFRTKLADGPGGGVT
        WLHA+FR K   GPGGGVT
Subjt:  WLHAIFRTKLADGPGGGVT

A0A5D3DX39 Reverse transcriptase9.6e-1560.76Show/hide
Query:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP
        R+    VEIELPVPDTLPTSAESS+S  STW+ELY E F  V +      + EDDV WLHA+FR K A GPGGGV   P
Subjt:  RELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGAGAAAATAGGTTGAGTCTACAGACCAGGGAACTAACCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCAAC
TTTCAGTACGTGGGTGGAGTTGTACAGTGAGTCTTTTTTTATTGTAAATGTCGTTGGTCAACAAGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCC
GGACTAAGCTAGCAGATGGTCCGGGAGGGGGTGTGACAGATATACCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGA
mRNA sequenceShow/hide mRNA sequence
CCAAGAGAAAATAGGTTGAGTCTACAGACCAGGGAACTAACCAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCAAC
TTTCAGTACGTGGGTGGAGTTGTACAGTGAGTCTTTTTTTATTGTAAATGTCGTTGGTCAACAAGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCC
GGACTAAGCTAGCAGATGGTCCGGGAGGGGGTGTGACAGATATACCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTAAATGA
Protein sequenceShow/hide protein sequence
PRENRLSLQTRELTKTVEIELPVPDTLPTSAESSKSTFSTWVELYSESFFIVNVVGQQVSLEEDDVRWLHAIFRTKLADGPGGGVTDIPVGFYALKLVDSK