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Spg018236 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018236
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:10333208..10344113
RNA-Seq ExpressionSpg018236
SyntenySpg018236
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM93404.1 hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]8.9e-1340.83Show/hide
Query:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA
        PHHG P CI +E FY+GL+ AS+ +++ASANG+ L KS NE   IL+TIA+NN  W      T  K    V+E +A + + AQ+  + +++  +++ N  
Subjt:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NIAPANAMSSP------CGE
        NI PA A+ S       CGE
Subjt:  NIAPANAMSSP------CGE

KAA3473721.1 retroelement pol polyprotein-like [Gossypium australe]3.7e-1130.04Show/hide
Query:  PHTVRDQRNQRELLNRSPKGSLGPTEFSSEEEQEGTAFLFVEASLAKNGQVYNEGAQFFNSWCHTSSPLQYIGSFHLLVVQDIEDGALAF-TLQYSDPHH
        PH++RD+   R  LN  P  S+   +  +E       FL      +KN ++ NE                 I +FH +  + + +    F  L    PHH
Subjt:  PHTVRDQRNQRELLNRSPKGSLGPTEFSSEEEQEGTAFLFVEASLAKNGQVYNEGAQFFNSWCHTSSPLQYIGSFHLLVVQDIEDGALAF-TLQYSDPHH

Query:  GFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVV---ETEANSTMQAQIKVIHSMMMGMTMNNQA
        G P CI LE FY+GL   ++ +V+ASANG+ L KS NE + I++ IA+NN  W    PT+   +  +V    E +A +++ +Q+  I SM   +T N   
Subjt:  GFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVV---ETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NIA--PANAMSSPCGEICGTNNI
        + A  P N   +     CG  ++
Subjt:  NIA--PANAMSSPCGEICGTNNI

XP_030478229.1 uncharacterized protein LOC115695294 [Cannabis sativa]3.7e-1137.5Show/hide
Query:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA
        PHHG P CI +E FY+GL+ AS+ +++ASANG+ L KS NE   IL+TIA+NN  W      T  K    V+E +A + + AQ+  + +++  +++    
Subjt:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NIAPANAMSSP------CGE
        N+ PA  + +       CGE
Subjt:  NIAPANAMSSP------CGE

XP_030483354.1 uncharacterized protein LOC115699947 [Cannabis sativa]8.9e-1340.83Show/hide
Query:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA
        PHHG P CI +E FY+GL+ AS+ +++ASANG+ L KS NE   IL+TIA+NN  W      T  K    V+E +A + + AQ+  + +++  +++ N  
Subjt:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NIAPANAMSSP------CGE
        NI PA A+ S       CGE
Subjt:  NIAPANAMSSP------CGE

XP_030505184.1 uncharacterized protein LOC115720166 [Cannabis sativa]5.7e-1237.5Show/hide
Query:  IGSFHLLVVQDIEDGALAF-TLQYSDPHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVET
        I SFH L  +   D    F  L    PHHG P CI +E FY+GL+  S+ +++ASANG+ L KS NE   IL+TIA+NN  W         K    V+E 
Subjt:  IGSFHLLVVQDIEDGALAF-TLQYSDPHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVET

Query:  EANSTMQAQIKVIHSMMMGMTMNNQANIAPANAMSS
        +A + +  Q+  + +++  +++ N  NI PA A+ S
Subjt:  EANSTMQAQIKVIHSMMMGMTMNNQANIAPANAMSS

TrEMBL top hitse value%identityAlignment
A0A5B6VWJ0 Retroelement pol polyprotein-like1.8e-1130.04Show/hide
Query:  PHTVRDQRNQRELLNRSPKGSLGPTEFSSEEEQEGTAFLFVEASLAKNGQVYNEGAQFFNSWCHTSSPLQYIGSFHLLVVQDIEDGALAF-TLQYSDPHH
        PH++RD+   R  LN  P  S+   +  +E       FL      +KN ++ NE                 I +FH +  + + +    F  L    PHH
Subjt:  PHTVRDQRNQRELLNRSPKGSLGPTEFSSEEEQEGTAFLFVEASLAKNGQVYNEGAQFFNSWCHTSSPLQYIGSFHLLVVQDIEDGALAF-TLQYSDPHH

Query:  GFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVV---ETEANSTMQAQIKVIHSMMMGMTMNNQA
        G P CI LE FY+GL   ++ +V+ASANG+ L KS NE + I++ IA+NN  W    PT+   +  +V    E +A +++ +Q+  I SM   +T N   
Subjt:  GFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVV---ETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NIA--PANAMSSPCGEICGTNNI
        + A  P N   +     CG  ++
Subjt:  NIA--PANAMSSPCGEICGTNNI

A0A6J1EEI2 uncharacterized protein LOC1114333948.9e-1133.82Show/hide
Query:  LLVVQDIEDGALAFT------LQYSDPHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVET
        ++V Q  ED  L+        +    PHHG P CI +E FY+GL+ A+K +V+ASANG+ L K+ NE + IL+ IA+NN  W ++      K    V+E 
Subjt:  LLVVQDIEDGALAFT------LQYSDPHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVET

Query:  EANSTMQAQIKVIHSMMMGMTMNNQANI-APANAMS
        +A S++ AQ+  + +++  + +   + I AP + ++
Subjt:  EANSTMQAQIKVIHSMMMGMTMNNQANI-APANAMS

A0A6J1EQ90 uncharacterized protein LOC1114364113.4e-1035.83Show/hide
Query:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQI----KVIHSMMMGMTM
        PHHG P CI +E FY+GL+  +K +V+ASANG+ L K+ NE + IL+ IA+NN  W ++      K    V+E +A S++ AQ+     ++ ++ +G   
Subjt:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQI----KVIHSMMMGMTM

Query:  NNQANIAPANAMSSPCGEIC
          +A +  A A++    E C
Subjt:  NNQANIAPANAMSSPCGEIC

A0A6J1G7Q6 uncharacterized protein LOC1114515984.4e-1039.25Show/hide
Query:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA
        PHHG P CI +E FY+GL+ A+K +V+ASANG  L K+ NE + IL+ IA+NN  W ++  +   K + +V+E +A S++ AQ+  + +++  +     +
Subjt:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NI-APAN
         I APA+
Subjt:  NI-APAN

U5CUI2 Retrotrans_gag domain-containing protein4.3e-1340.83Show/hide
Query:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA
        PHHG P CI +E FY+GL+ AS+ +++ASANG+ L KS NE   IL+TIA+NN  W      T  K    V+E +A + + AQ+  + +++  +++ N  
Subjt:  PHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATNNRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQA

Query:  NIAPANAMSSP------CGE
        NI PA A+ S       CGE
Subjt:  NIAPANAMSSP------CGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGTCTTGATGCTGATGAGACTCTAGGGAAAATGGTCATTTTACGCTCCAGTTTCGCTCGTTTTAGTCCTGAATTGCTTCTGAAGCTCCATTCTCTCATCTCTCATTCTTC
TCCATTGCTTGATGCTTCAAGCATTCCCTTCCCATTCCCTATCTTATATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTATAGGTGGTCCAC
ACACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGGTTCATTAGGTCCCACTGAATTTTCCAGCGAAGAAGAACAAGAAGGTACTGCGTTT
TTGTTCGTCGAAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGGGCTCAATTCTTCAACTCTTGGTGTCATACTTCAAGCCCGCTTCAATACATTGGGTCTTT
TCACCTCCTCGTCGTCCAAGACATCGAGGATGGGGCACTAGCTTTCACACTACAATACAGTGACCCACATCATGGATTTCCTGCTTGCATTATCTTGGAGCATTTTTATA
GTGGATTAGATCAAGCTTCAAAGGCACTAGTGAATGCATCTGCAAACGGATCTTTCTTGAAGAAGTCTGCTAATGAGGTGCATGCTATTTTGGACACCATAGCCACAAAC
AATCGCCATTGGGGAGAAATTGAGCCAACTACGATCTTAAAGAATTCAGTCAAAGTAGTGGAAACAGAGGCTAACTCTACGATGCAAGCCCAGATCAAGGTTATTCATAG
CATGATGATGGGCATGACCATGAACAATCAAGCCAACATAGCCCCTGCCAATGCTATGTCTTCTCCCTGTGGTGAAATATGTGGGACAAACAATATCAGTTCTCATAAAG
GTGATATAGAAGAAAAAGCTCGAAAGAGATTGTTCGACGGTATAGGGCAAGCTGCCTAA
mRNA sequenceShow/hide mRNA sequence
AGTCTTGATGCTGATGAGACTCTAGGGAAAATGGTCATTTTACGCTCCAGTTTCGCTCGTTTTAGTCCTGAATTGCTTCTGAAGCTCCATTCTCTCATCTCTCATTCTTC
TCCATTGCTTGATGCTTCAAGCATTCCCTTCCCATTCCCTATCTTATATAGACTCCCACAAGTCGTTCTTGGCCCGGAGAATAGTAGGGAAGACACTATAGGTGGTCCAC
ACACCGTTCGTGATCAAAGGAATCAAAGGGAGTTGTTGAATCGGTCTCCAAAAGGTTCATTAGGTCCCACTGAATTTTCCAGCGAAGAAGAACAAGAAGGTACTGCGTTT
TTGTTCGTCGAAGCATCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGGGCTCAATTCTTCAACTCTTGGTGTCATACTTCAAGCCCGCTTCAATACATTGGGTCTTT
TCACCTCCTCGTCGTCCAAGACATCGAGGATGGGGCACTAGCTTTCACACTACAATACAGTGACCCACATCATGGATTTCCTGCTTGCATTATCTTGGAGCATTTTTATA
GTGGATTAGATCAAGCTTCAAAGGCACTAGTGAATGCATCTGCAAACGGATCTTTCTTGAAGAAGTCTGCTAATGAGGTGCATGCTATTTTGGACACCATAGCCACAAAC
AATCGCCATTGGGGAGAAATTGAGCCAACTACGATCTTAAAGAATTCAGTCAAAGTAGTGGAAACAGAGGCTAACTCTACGATGCAAGCCCAGATCAAGGTTATTCATAG
CATGATGATGGGCATGACCATGAACAATCAAGCCAACATAGCCCCTGCCAATGCTATGTCTTCTCCCTGTGGTGAAATATGTGGGACAAACAATATCAGTTCTCATAAAG
GTGATATAGAAGAAAAAGCTCGAAAGAGATTGTTCGACGGTATAGGGCAAGCTGCCTAA
Protein sequenceShow/hide protein sequence
SLDADETLGKMVILRSSFARFSPELLLKLHSLISHSSPLLDASSIPFPFPILYRLPQVVLGPENSREDTIGGPHTVRDQRNQRELLNRSPKGSLGPTEFSSEEEQEGTAF
LFVEASLAKNGQVYNEGAQFFNSWCHTSSPLQYIGSFHLLVVQDIEDGALAFTLQYSDPHHGFPACIILEHFYSGLDQASKALVNASANGSFLKKSANEVHAILDTIATN
NRHWGEIEPTTILKNSVKVVETEANSTMQAQIKVIHSMMMGMTMNNQANIAPANAMSSPCGEICGTNNISSHKGDIEEKARKRLFDGIGQAA