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Spg018250 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018250
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:17729332..17730897
RNA-Seq ExpressionSpg018250
SyntenySpg018250
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1345.6Show/hide
Query:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW
        PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+ELY ES                     EG    +  DDV W
Subjt:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW

Query:  LHAIFRTKLAGGLGGGCPGATIPSE
        LHAIFR K AGG GGG   +   SE
Subjt:  LHAIFRTKLAGGLGGGCPGATIPSE

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.0e-1553.54Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG
        PRGNR +L T KL KTVEIEL VPDTLPTSAESS S+SSTW+ELY ES                     EG    +  DD+ WLHA+F  K AG  GGG
Subjt:  PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.1e-1246.15Show/hide
Query:  PRGNRSSLQTRKLAKT---------------VEIELLVPDTLPTSAESSNSSSSTWVELYIE------------------------SEGQRVSLEEDDVH
        PRGNR SLQTR+L KT               V IEL VPD LPTSAESS S+SSTW+ELY E                        S G    +  DDV 
Subjt:  PRGNRSSLQTRKLAKT---------------VEIELLVPDTLPTSAESSNSSSSTWVELYIE------------------------SEGQRVSLEEDDVH

Query:  WLHAIFRTKLAGGLGGG
        WLHA+FR K  GG GGG
Subjt:  WLHAIFRTKLAGGLGGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.7e-1347.41Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW
        PRGNRSSLQT +L KT                 VEIEL VPDTLPTSAES  S+SSTW+ELY E                      EG    +  DDV W
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW

Query:  LHAIFRTKLAGGLGGG
        LH +FR K+AGG GGG
Subjt:  LHAIFRTKLAGGLGGG

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]2.7e-1345.6Show/hide
Query:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW
        PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+ELY ES                     EG    +  DDV W
Subjt:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW

Query:  LHAIFRTKLAGGLGGGCPGATIPSE
        LHAIFR K AGG GGG   +   SE
Subjt:  LHAIFRTKLAGGLGGGCPGATIPSE

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.3e-1345.6Show/hide
Query:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW
        PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+ELY ES                     EG    +  DDV W
Subjt:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW

Query:  LHAIFRTKLAGGLGGGCPGATIPSE
        LHAIFR K AGG GGG   +   SE
Subjt:  LHAIFRTKLAGGLGGGCPGATIPSE

A0A5A7UAH6 CCHC-type domain-containing protein2.4e-1553.54Show/hide
Query:  PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG
        PRGNR +L T KL KTVEIEL VPDTLPTSAESS S+SSTW+ELY ES                     EG    +  DD+ WLHA+F  K AG  GGG
Subjt:  PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHWLHAIFRTKLAGGLGGG

A0A5A7UT17 CCHC-type domain-containing protein2.5e-1246.15Show/hide
Query:  PRGNRSSLQTRKLAKT---------------VEIELLVPDTLPTSAESSNSSSSTWVELYIE------------------------SEGQRVSLEEDDVH
        PRGNR SLQTR+L KT               V IEL VPD LPTSAESS S+SSTW+ELY E                        S G    +  DDV 
Subjt:  PRGNRSSLQTRKLAKT---------------VEIELLVPDTLPTSAESSNSSSSTWVELYIE------------------------SEGQRVSLEEDDVH

Query:  WLHAIFRTKLAGGLGGG
        WLHA+FR K  GG GGG
Subjt:  WLHAIFRTKLAGGLGGG

A0A5A7VIY9 Uncharacterized protein1.3e-1347.41Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW
        PRGNRSSLQT +L KT                 VEIEL VPDTLPTSAES  S+SSTW+ELY E                      EG    +  DDV W
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW

Query:  LHAIFRTKLAGGLGGG
        LH +FR K+AGG GGG
Subjt:  LHAIFRTKLAGGLGGG

A0A5D3DR18 Gag/pol protein1.3e-1345.6Show/hide
Query:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW
        PRGNR  LQT +L K                  VEIEL +PDTLPTSAESS S+SSTW+ELY ES                     EG    +  DDV W
Subjt:  PRGNRSSLQTRKLAK-----------------TVEIELLVPDTLPTSAESSNSSSSTWVELYIES---------------------EGQRVSLEEDDVHW

Query:  LHAIFRTKLAGGLGGGCPGATIPSE
        LHAIFR K AGG GGG   +   SE
Subjt:  LHAIFRTKLAGGLGGGCPGATIPSE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAATTCAAG
CTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTG
GTCTGGGAGGGGGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGTGA
mRNA sequenceShow/hide mRNA sequence
CCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCTAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAATTCAAG
CTCCAGTACGTGGGTGGAGTTGTACATTGAGTCTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTG
GTCTGGGAGGGGGTTGTCCTGGCGCAACCATCCCTTCGGAGGGCCTGATCATAGGATTCGGAACATCGTGA
Protein sequenceShow/hide protein sequence
PRGNRSSLQTRKLAKTVEIELLVPDTLPTSAESSNSSSSTWVELYIESEGQRVSLEEDDVHWLHAIFRTKLAGGLGGGCPGATIPSEGLIIGFGTS