; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018262 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018262
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold3:5259114..5262072
RNA-Seq ExpressionSpg018262
SyntenySpg018262
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5569073.1 hypothetical protein DKX38_002866 [Salix brachista]4.5e-2246.29Show/hide
Query:  PWLVSNIPSRALGILRLTNSLEVHKWESREISTPTDGRRHPV-SGVKSHPSRHPRAPISKLNLQ-LTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRR
        P L+S    R  G LRLT+        S+   +   GR H    G+ +    + R P S L +    +     K A      + + V   D  G  + R 
Subjt:  PWLVSNIPSRALGILRLTNSLEVHKWESREISTPTDGRRHPV-SGVKSHPSRHPRAPISKLNLQ-LTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRR

Query:  AVREQRRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
            Q  R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK +PVWK
Subjt:  AVREQRRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

KAG5251441.1 ribosomal protein [Salix suchowensis]4.5e-2272.94Show/hide
Query:  DDGGFRRRRAVR-EQRRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        D  G  + RAV   Q  R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK +PVWK
Subjt:  DDGGFRRRRAVR-EQRRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

XP_004147941.1 40S ribosomal protein S13 [Cucumis sativus]5.9e-2283.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +  +GLAP+IPEDL HLIKK VSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

XP_016682077.1 40S ribosomal protein S13 [Gossypium hirsutum]4.5e-2283.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +  RGLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

XP_031092420.1 40S ribosomal protein S13-like [Ipomoea triloba]3.4e-2245.88Show/hide
Query:  PSRALGILRLTNSLEVHKWESREISTPTD--GRRHP-VSGVKSHPSRHPRAPISKLNL-QLTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRRAVREQ
        PS  LG   +    E    + R+  +PT   GR H    G+ S    + R+P S L +    ++    K A      + + V   D  G  + +     +
Subjt:  PSRALGILRLTNSLEVHKWESREISTPTD--GRRHP-VSGVKSHPSRHPRAPISKLNL-QLTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRRAVREQ

Query:  RRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
          R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  RRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

TrEMBL top hitse value%identityAlignment
A0A0A0L5N6 Ribosomal_S13_N domain-containing protein2.8e-2283.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +  +GLAP+IPEDL HLIKK VSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

A0A1U8IVC5 40S ribosomal protein S13-like2.2e-2283.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +  RGLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

A0A5N5NQR3 Ribosomal_S13_N domain-containing protein2.2e-2246.29Show/hide
Query:  PWLVSNIPSRALGILRLTNSLEVHKWESREISTPTDGRRHPV-SGVKSHPSRHPRAPISKLNLQ-LTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRR
        P L+S    R  G LRLT+        S+   +   GR H    G+ +    + R P S L +    +     K A      + + V   D  G  + R 
Subjt:  PWLVSNIPSRALGILRLTNSLEVHKWESREISTPTDGRRHPV-SGVKSHPSRHPRAPISKLNLQ-LTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRR

Query:  AVREQRRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
            Q  R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK +PVWK
Subjt:  AVREQRRREIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

A0A6A2XA46 40S ribosomal protein S132.2e-2283.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +  RGLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

A0A7J6HLU1 Ribosomal_S13_N domain-containing protein2.8e-2283.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK VSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S131.1e-2382.35Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK VSIRKHLER RKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

P59223 40S ribosomal protein S13-12.2e-2482.35Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

P59224 40S ribosomal protein S13-22.2e-2482.35Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

P62302 40S ribosomal protein S131.0e-2483.82Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK VSIRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

Q05761 40S ribosomal protein S131.6e-2277.94Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL  LIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYK+TKK  P WK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.6e-2582.35Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK

AT4G00100.1 ribosomal protein S13A1.6e-2582.35Show/hide
Query:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK
        R +   GLAP+IPEDL HLIKK V+IRKHLERNRKDKDSKF+LILVESRIHRLARYYKKTKK  PVWK
Subjt:  REIAERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCATGGCTCGTCAGCAACATTCCGTCACGCGCTCTGGGCATCTTAAGGCTTACCAACTCATTGGAGGTGCACAAGTGGGAATCTCGGGAGATCTCTACTCCTAC
TGATGGTAGAAGGCACCCAGTCAGTGGAGTCAAGTCTCACCCATCAAGGCACCCTCGGGCCCCTATTAGCAAGCTTAACTTGCAACTAACCATCAAGTTTCTTTCCATAA
AGGTTGCAACAGTTGTGCGCGTTGCTGCTCCAGTGCCGGTGGGTTCGTGCGACGACGACGGTGGCTTCAGACGGCGGCGTGCAGTTCGTGAGCAGCGGCGGAGAGAGATT
GCCGAGAGAGGGCTAGCTCCTAAAATCCCAGAGGATCTTTGCCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAATAGGAAAGACAAGGATTCGAA
GTTCAAGTTAATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCAGGTACTACAAGAAGACAAAGAAGTTTTCCCCTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTCCATGGCTCGTCAGCAACATTCCGTCACGCGCTCTGGGCATCTTAAGGCTTACCAACTCATTGGAGGTGCACAAGTGGGAATCTCGGGAGATCTCTACTCCTAC
TGATGGTAGAAGGCACCCAGTCAGTGGAGTCAAGTCTCACCCATCAAGGCACCCTCGGGCCCCTATTAGCAAGCTTAACTTGCAACTAACCATCAAGTTTCTTTCCATAA
AGGTTGCAACAGTTGTGCGCGTTGCTGCTCCAGTGCCGGTGGGTTCGTGCGACGACGACGGTGGCTTCAGACGGCGGCGTGCAGTTCGTGAGCAGCGGCGGAGAGAGATT
GCCGAGAGAGGGCTAGCTCCTAAAATCCCAGAGGATCTTTGCCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCATTTGGAGAGAAATAGGAAAGACAAGGATTCGAA
GTTCAAGTTAATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCAGGTACTACAAGAAGACAAAGAAGTTTTCCCCTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MFPWLVSNIPSRALGILRLTNSLEVHKWESREISTPTDGRRHPVSGVKSHPSRHPRAPISKLNLQLTIKFLSIKVATVVRVAAPVPVGSCDDDGGFRRRRAVREQRRREI
AERGLAPKIPEDLCHLIKKVVSIRKHLERNRKDKDSKFKLILVESRIHRLARYYKKTKKFSPVWK