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Spg018339 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018339
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:19092140..19093943
RNA-Seq ExpressionSpg018339
SyntenySpg018339
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.4e-1455.21Show/hide
Query:  LPPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPMPDTLPTSTESFRSSSS--------STFQ---EGQRVSLEEDDVRWLHAIFQTKLAGGLGG
        L PEA  YRVHTGY+PLLTLSVLRDNDAIVEIE  +P+ L  STE+  S  S        S FQ     +++S+E+  V  LH +FQ+KLAG LGG
Subjt:  LPPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPMPDTLPTSTESFRSSSS--------STFQ---EGQRVSLEEDDVRWLHAIFQTKLAGGLGG

KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.6e-1845.95Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP----------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMP
        V+K NQKLY+ +   + R   L CL SG FWTNWL I FSFL                 P      + TG +       LLTL+VL DNDAIVEIELP+ 
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP----------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMP

Query:  DTLPTSTESFRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGLGG
        DTLP S ES  S+S S         + EDDV WLH +F+ K AGG GG
Subjt:  DTLPTSTESFRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGLGG

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1435.29Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------
        V+K NQKLY+ +   + R   L CLCSG FW NWL I FSFL    +  R+                       T   PL TLSVL DNDA+        
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------

Query:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG
                               VEIELP+PD LPTS ES RS+SS+  +   E   V +                        DDV WLHAIF+ K AG
Subjt:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG

Query:  GLGG
        G GG
Subjt:  GLGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]6.5e-2041.28Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP--------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMPDT
        V+K NQKLY+ +   + R   L CLCSG FWTNWL I FSFL               P      + TG +       L TLSVL DN+A+VEIELP+PDT
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP--------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMPDT

Query:  LPTSTESFRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGLGG
        LPTS ESF S+SS+  +                          EG    +  DDV WLH +F+ K+AGG GG
Subjt:  LPTSTESFRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGLGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-1435.29Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------
        V+K NQKLY+ +   + R   L CLCSG FW NWL I FSFL    +  R+                       T   PL TLSVL DNDA+        
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------

Query:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG
                               VEIELP+PD LPTS ES RS+SS+  +   E   V +                        DDV WLHAIF+ K AG
Subjt:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG

Query:  GLGG
        G GG
Subjt:  GLGG

TrEMBL top hitse value%identityAlignment
A0A5A7SPZ6 DNA/RNA polymerases superfamily protein6.8e-1555.21Show/hide
Query:  LPPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPMPDTLPTSTESFRSSSS--------STFQ---EGQRVSLEEDDVRWLHAIFQTKLAGGLGG
        L PEA  YRVHTGY+PLLTLSVLRDNDAIVEIE  +P+ L  STE+  S  S        S FQ     +++S+E+  V  LH +FQ+KLAG LGG
Subjt:  LPPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPMPDTLPTSTESFRSSSS--------STFQ---EGQRVSLEEDDVRWLHAIFQTKLAGGLGG

A0A5A7T7M6 Reverse transcriptase6.8e-1535.29Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------
        V+K NQKLY+ +   + R   L CLCSG FW NWL I FSFL    +  R+                       T   PL TLSVL DNDA+        
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------

Query:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG
                               VEIELP+PD LPTS ES RS+SS+  +   E   V +                        DDV WLHAIF+ K AG
Subjt:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG

Query:  GLGG
        G GG
Subjt:  GLGG

A0A5A7VIY9 Uncharacterized protein3.2e-2041.28Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP--------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMPDT
        V+K NQKLY+ +   + R   L CLCSG FWTNWL I FSFL               P      + TG +       L TLSVL DN+A+VEIELP+PDT
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP--------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMPDT

Query:  LPTSTESFRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGLGG
        LPTS ESF S+SS+  +                          EG    +  DDV WLH +F+ K+AGG GG
Subjt:  LPTSTESFRSSSSSTFQ--------------------------EGQRVSLEEDDVRWLHAIFQTKLAGGLGG

A0A5D3BSA6 Retrotrans_gag domain-containing protein7.8e-1945.95Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP----------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMP
        V+K NQKLY+ +   + R   L CL SG FWTNWL I FSFL                 P      + TG +       LLTL+VL DNDAIVEIELP+ 
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLP----------------PEAIWYRVHTGYIP------LLTLSVLRDNDAIVEIELPMP

Query:  DTLPTSTESFRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGLGG
        DTLP S ES  S+S S         + EDDV WLH +F+ K AGG GG
Subjt:  DTLPTSTESFRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGLGG

A0A5D3BTP3 Reverse transcriptase6.8e-1535.29Show/hide
Query:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------
        V+K NQKLY+ +   + R   L CLCSG FW NWL I FSFL    +  R+                       T   PL TLSVL DNDA+        
Subjt:  VYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRV----------------------HTGYIPLLTLSVLRDNDAI--------

Query:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG
                               VEIELP+PD LPTS ES RS+SS+  +   E   V +                        DDV WLHAIF+ K AG
Subjt:  -----------------------VEIELPMPDTLPTSTESFRSSSSSTFQ---EGQRVSL----------------------EEDDVRWLHAIFQTKLAG

Query:  GLGG
        G GG
Subjt:  GLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAGAGCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTAGGGTGTACAAGTT
GAATCAGAAGCTCTATGTGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCAT
TTCTTCCGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGATG
CCTGATACACTGCCAACGTCTACTGAAAGTTTCAGGTCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGC
CATCTTCCAGACTAAGCTAGCAGGTGGTCTGGGAGGG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGTGCAGAGCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTAGGGTGTACAAGTT
GAATCAGAAGCTCTATGTGGAGAAAGATAAAGGGCAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCAT
TTCTTCCGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTATCGTAGAGATCGAGCTCCCGATG
CCTGATACACTGCCAACGTCTACTGAAAGTTTCAGGTCAAGCTCCAGTTCTACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGC
CATCTTCCAGACTAAGCTAGCAGGTGGTCTGGGAGGG
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFVQSRRISGVLWCFEHSRVYKLNQKLYVEKDKGQQRTSNLCCLCSGHFWTNWLGIPFSFLPPEAIWYRVHTGYIPLLTLSVLRDNDAIVEIELPM
PDTLPTSTESFRSSSSSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGLGG