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Spg018345 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018345
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold3:9353886..9356905
RNA-Seq ExpressionSpg018345
SyntenySpg018345
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]7.9e-1448Show/hide
Query:  MTEILCPRLYGTVCTQAEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKP----SYVRAAPRDGQRVSLEEDDVRWLHAIFQAKLAGGSG
        MTEIL  RLYGTVCTQ +IELP+PD LPTSA+SS S+ +TW+ELY E V++     F+       ++      G    +  DDV WLHA+F+ K A   G
Subjt:  MTEILCPRLYGTVCTQAEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKP----SYVRAAPRDGQRVSLEEDDVRWLHAIFQAKLAGGSG

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-1852.63Show/hide
Query:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL
        MTEIL PRLYGTVCTQ                  EIELPVPD LPTSA+SS S+SSTW+ELY+EFV++     F     VR            EDDV WL
Subjt:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL

Query:  HAIFQAKLAGGSGG
        HA+F+AK AGG GG
Subjt:  HAIFQAKLAGGSGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.1e-1457.83Show/hide
Query:  EIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSLEEDDVRWLHAIFQAKLAGGSGG
        EIELPVPD LPTSA+S  S+SSTW+ELY EFV++  +  F KPS VRAA     +G    +  DDV WLH +F+AK+AGG GG
Subjt:  EIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSLEEDDVRWLHAIFQAKLAGGSGG

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.1e-1951.64Show/hide
Query:  ISIDYMTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSL
        +SIDYMTEIL  RL GTVCTQ                  EIELPVPD LPTSA+   S+SSTW+ELY+E V++  +  F KPS VRAA     +G    +
Subjt:  ISIDYMTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSL

Query:  EEDDVRWLHAIFQAKLAGGSGG
          DDV WLHA+F+AK AGG  G
Subjt:  EEDDVRWLHAIFQAKLAGGSGG

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.9e-1852.63Show/hide
Query:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL
        MTEIL PRLYGTVCTQ                  EIELPVPD LPTSA+SS S+SSTW+ELY+EFV++     F     VR            EDDV WL
Subjt:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL

Query:  HAIFQAKLAGGSGG
        HA+F+AK AGG GG
Subjt:  HAIFQAKLAGGSGG

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.8e-1448Show/hide
Query:  MTEILCPRLYGTVCTQAEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKP----SYVRAAPRDGQRVSLEEDDVRWLHAIFQAKLAGGSG
        MTEIL  RLYGTVCTQ +IELP+PD LPTSA+SS S+ +TW+ELY E V++     F+       ++      G    +  DDV WLHA+F+ K A   G
Subjt:  MTEILCPRLYGTVCTQAEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKP----SYVRAAPRDGQRVSLEEDDVRWLHAIFQAKLAGGSG

A0A5A7VIY9 Uncharacterized protein1.0e-1457.83Show/hide
Query:  EIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSLEEDDVRWLHAIFQAKLAGGSGG
        EIELPVPD LPTSA+S  S+SSTW+ELY EFV++  +  F KPS VRAA     +G    +  DDV WLH +F+AK+AGG GG
Subjt:  EIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSLEEDDVRWLHAIFQAKLAGGSGG

A0A5A7VMG9 Reverse transcriptase3.3e-1852.63Show/hide
Query:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL
        MTEIL PRLYGTVCTQ                  EIELPVPD LPTSA+SS S+SSTW+ELY+EFV++     F     VR            EDDV WL
Subjt:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL

Query:  HAIFQAKLAGGSGG
        HA+F+AK AGG GG
Subjt:  HAIFQAKLAGGSGG

A0A5D3CCC7 DNA/RNA polymerases superfamily protein3.9e-1951.64Show/hide
Query:  ISIDYMTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSL
        +SIDYMTEIL  RL GTVCTQ                  EIELPVPD LPTSA+   S+SSTW+ELY+E V++  +  F KPS VRAA     +G    +
Subjt:  ISIDYMTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPR---DGQRVSL

Query:  EEDDVRWLHAIFQAKLAGGSGG
          DDV WLHA+F+AK AGG  G
Subjt:  EEDDVRWLHAIFQAKLAGGSGG

A0A5D3DX39 Reverse transcriptase3.3e-1852.63Show/hide
Query:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL
        MTEIL PRLYGTVCTQ                  EIELPVPD LPTSA+SS S+SSTW+ELY+EFV++     F     VR            EDDV WL
Subjt:  MTEILCPRLYGTVCTQ-----------------AEIELPVPDALPTSAKSSRSSSSTWVELYIEFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWL

Query:  HAIFQAKLAGGSGG
        HA+F+AK AGG GG
Subjt:  HAIFQAKLAGGSGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTTCGTGCAAACCAAGAGGATCTCTGGTGTTCTCTGGTGTTTTCAGCATTCTGGGGTGTACAAGT
TGAATCAGAAGCTCTATTTGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGTGCCCGAGGCTAT
ATGGTACCGTGTGCACACAGGCAGAGATCGAGCTCCCGGTGCCTGATGCACTGCCAACGTCTGCTAAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATT
GAGTTTGTCTATATTGTAACTATTTTGTCATTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCGCGATGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCT
TCACGCCATCTTCCAGGCTAAGCTAGCAGGTGGTTCGGGAGGGGATAAACTCATGGGCAACCTGAGGACTTATTGGGCATATGCAAAGGAGAGGGACAAAGCCATTAGAG
AATTCTACCTCTCTATCGCCCCAAGTATTGCTCCTATTTTTCCCAATTTCCCTCAATCGCTGCTGCCTCAAGAAGACAAGGATTCTGGTGAAGAAGACGATGAAAATGAT
GATGAAGAAGATGAACAGAAAGAGAGTTCCTCAGACGAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTTTATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTTCGTGCAAACCAAGAGGATCTCTGGTGTTCTCTGGTGTTTTCAGCATTCTGGGGTGTACAAGT
TGAATCAGAAGCTCTATTTGATAACGATAAGCAGGCATGTTCTAATGTTTTCATGGGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGTGCCCGAGGCTAT
ATGGTACCGTGTGCACACAGGCAGAGATCGAGCTCCCGGTGCCTGATGCACTGCCAACGTCTGCTAAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATT
GAGTTTGTCTATATTGTAACTATTTTGTCATTTTCCAAACCGAGTTATGTCAGGGCTGCACCTCGCGATGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCT
TCACGCCATCTTCCAGGCTAAGCTAGCAGGTGGTTCGGGAGGGGATAAACTCATGGGCAACCTGAGGACTTATTGGGCATATGCAAAGGAGAGGGACAAAGCCATTAGAG
AATTCTACCTCTCTATCGCCCCAAGTATTGCTCCTATTTTTCCCAATTTCCCTCAATCGCTGCTGCCTCAAGAAGACAAGGATTCTGGTGAAGAAGACGATGAAAATGAT
GATGAAGAAGATGAACAGAAAGAGAGTTCCTCAGACGAGGACTAG
Protein sequenceShow/hide protein sequence
MRSLWFLKWKTEHRIFRANQEDLWCSLVFSAFWGVQVESEALFDNDKQACSNVFMGFSEISIDYMTEILCPRLYGTVCTQAEIELPVPDALPTSAKSSRSSSSTWVELYI
EFVYIVTILSFSKPSYVRAAPRDGQRVSLEEDDVRWLHAIFQAKLAGGSGGDKLMGNLRTYWAYAKERDKAIREFYLSIAPSIAPIFPNFPQSLLPQEDKDSGEEDDEND
DEEDEQKESSSDED