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Spg018352 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018352
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:8251875..8253750
RNA-Seq ExpressionSpg018352
SyntenySpg018352
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]2.8e-1256.04Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVT
        PRGNR SLQT EL KT                 VEIELPV DTLP SAESS S+S S        + EDDV WLH +FR K AGGPGGGVT
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVT

KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.7e-1448.62Show/hide
Query:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK
        RA+    WPRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +                +  DDV WLHA+FR K
Subjt:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK

Query:  LAGGPGGGV
          GGPGGGV
Subjt:  LAGGPGGGV

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.5e-1355.79Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVTIRPA
        PRGNR SLQT +L KT                 VEIELPVPDTLPTSAES  S+S ST       +  DDV WLHA+FR K AGGPGGGVT   A
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVTIRPA

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.7e-1448.62Show/hide
Query:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK
        RA+    WPRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +                +  DDV WLHA+FR K
Subjt:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK

Query:  LAGGPGGGV
          GGPGGGV
Subjt:  LAGGPGGGV

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-1239.86Show/hide
Query:  YDETLMVFGVENRAQDFRAKQEDLWPRGNRSSLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSSTFQ---------------
        + + L +  V    Q    + +  WPRGNR  LQT EL K                  VEIELP+PDTLPTSAESS S+SS+  +               
Subjt:  YDETLMVFGVENRAQDFRAKQEDLWPRGNRSSLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSSTFQ---------------

Query:  -----------EGQWSL-EEDDVHWLHAIFRTKLAGGPGGGVT
                   EG   +   DDV WLHAIFR K AGGPGGGVT
Subjt:  -----------EGQWSL-EEDDVHWLHAIFRTKLAGGPGGGVT

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.0e-1239.86Show/hide
Query:  YDETLMVFGVENRAQDFRAKQEDLWPRGNRSSLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSSTFQ---------------
        + + L +  V    Q    + +  WPRGNR  LQT EL K                  VEIELP+PDTLPTSAESS S+SS+  +               
Subjt:  YDETLMVFGVENRAQDFRAKQEDLWPRGNRSSLQTRELAK-----------------TVEIELPVPDTLPTSAESSRSSSSSTFQ---------------

Query:  -----------EGQWSL-EEDDVHWLHAIFRTKLAGGPGGGVT
                   EG   +   DDV WLHAIFR K AGGPGGGVT
Subjt:  -----------EGQWSL-EEDDVHWLHAIFRTKLAGGPGGGVT

A0A5A7TKT0 Reverse transcriptase4.2e-1448.62Show/hide
Query:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK
        RA+    WPRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +                +  DDV WLHA+FR K
Subjt:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK

Query:  LAGGPGGGV
          GGPGGGV
Subjt:  LAGGPGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein7.2e-1455.79Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVTIRPA
        PRGNR SLQT +L KT                 VEIELPVPDTLPTSAES  S+S ST       +  DDV WLHA+FR K AGGPGGGVT   A
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVTIRPA

A0A5D3BSA6 Retrotrans_gag domain-containing protein1.4e-1256.04Show/hide
Query:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVT
        PRGNR SLQT EL KT                 VEIELPV DTLP SAESS S+S S        + EDDV WLH +FR K AGGPGGGVT
Subjt:  PRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVT

A0A5D3D150 Reverse transcriptase4.2e-1448.62Show/hide
Query:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK
        RA+    WPRGNR SLQT EL KT                 VEIELP+PDTLPTSAESS S+SS+  +                +  DDV WLHA+FR K
Subjt:  RAKQEDLWPRGNRSSLQTRELAKT-----------------VEIELPVPDTLPTSAESSRSSSSSTFQ-----------EGQWSLEEDDVHWLHAIFRTK

Query:  LAGGPGGGV
          GGPGGGV
Subjt:  LAGGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAAGCTTCAGCTAAATATGATGAGACGTTAATGGTTTTTGGAGTGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAG
GTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGT
TTCAGGAGGGTCAATGGTCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATACGACCCGCT
TTGTATTTGATACAAATGCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAAGCTTCAGCTAAATATGATGAGACGTTAATGGTTTTTGGAGTGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAG
GTCGAGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCAGTGCCTGATACACTGCCAACATCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGT
TTCAGGAGGGTCAATGGTCGTTAGAGGAGGACGATGTCCATTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATACGACCCGCT
TTGTATTTGATACAAATGCAATGA
Protein sequenceShow/hide protein sequence
MKEASAKYDETLMVFGVENRAQDFRAKQEDLWPRGNRSSLQTRELAKTVEIELPVPDTLPTSAESSRSSSSSTFQEGQWSLEEDDVHWLHAIFRTKLAGGPGGGVTIRPA
LYLIQMQ