; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018372 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018372
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:8312707..8316049
RNA-Seq ExpressionSpg018372
SyntenySpg018372
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]1.7e-1841.91Show/hide
Query:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR
        ++YMS  E   SKR     +     +    K +  R E+R R    Q D  +KFEKYT T++P EQ+LMEI+N  LL  P ++ ++   R K +YC+FH 
Subjt:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQ
        DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQ

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.0e-2041.62Show/hide
Query:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR
        ++YMS  E   SKR E + KR      +   DK + +    R R  Q D  +KFEKYTPT++P EQ+LMEI++  LL  P ++K++   R K +YC+FHR
Subjt:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAEADQAR-ADQAEA
        DHGH+T++C  LK+E+E LIR GYLKE+  + +A Q  +  +   P+++     GGP   E+ + R AD  EA
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAEADQAR-ADQAEA

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]6.9e-2041.52Show/hide
Query:  EKYMSVEELLKSKRSELEHKR-HFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFH
        +KYMS EE    K+ ELE KR     +   +K    + E++ R    Q D  +KFEKYTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +YC+FH
Subjt:  EKYMSVEELLKSKRSELEHKR-HFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFH

Query:  RDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKDD--------GGPPLAEADQAR
        RDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++ +K          GG    E+D+ R
Subjt:  RDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKDD--------GGPPLAEADQAR

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]6.4e-1840Show/hide
Query:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR
        ++YMS  E   SKR E + KR      +   DK + +    R R  Q D  +KFEKYTPT++P EQ+LMEI++  LL  P ++K     R K +YC+FHR
Subjt:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAE-ADQARADQAEADP
        DH H+T++   LK+E+E LIR GYL+E+  + +A Q  +  +   P+++     GGP   E A + +AD  EA P
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAE-ADQARADQAEADP

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]3.8e-1837.06Show/hide
Query:  SKDPGARDLEELIDQVDPPFTEEKYMSVEELLKSKRS------ELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIR
        +K+P AR   EL+ +       +KY +V+EL  +KR        +  KR    +    K+K  R E++G           +F +YTP ++P+EQ+LM+IR
Subjt:  SKDPGARDLEELIDQVDPPFTEEKYMSVEELLKSKRS------ELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIR

Query:  NTNLLNVPRKLKSNPDNRDKSQYCIFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPT
        N +LL  P+ +K  P+ RD+S+YC +HRDH H+  +C  LK+EI++LI+ GYLKEF  K     R   P+
Subjt:  NTNLLNVPRKLKSNPDNRDKSQYCIFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPT

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128058.2e-1941.91Show/hide
Query:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR
        ++YMS  E   SKR     +     +    K +  R E+R R    Q D  +KFEKYT T++P EQ+LMEI+N  LL  P ++ ++   R K +YC+FH 
Subjt:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQ
        DHGH+T++C  LK+E+E LI  GYLKE+  + +A Q
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQ

A0A6J1DP33 uncharacterized protein LOC1110228862.2e-1651.85Show/hide
Query:  KYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQ
        K TPT++  EQ+LMEI++  LL  P ++K+ P  R K QY +FHRDHGH+T++C  LK+E+E LIR+GYLKE+    +A Q
Subjt:  KYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQ

A0A6J1DWY0 uncharacterized protein LOC1110252932.0e-2041.62Show/hide
Query:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR
        ++YMS  E   SKR E + KR      +   DK + +    R R  Q D  +KFEKYTPT++P EQ+LMEI++  LL  P ++K++   R K +YC+FHR
Subjt:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAEADQAR-ADQAEA
        DHGH+T++C  LK+E+E LIR GYLKE+  + +A Q  +  +   P+++     GGP   E+ + R AD  EA
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAEADQAR-ADQAEA

A0A6J1DYL6 uncharacterized protein LOC1110257853.1e-1840Show/hide
Query:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR
        ++YMS  E   SKR E + KR      +   DK + +    R R  Q D  +KFEKYTPT++P EQ+LMEI++  LL  P ++K     R K +YC+FHR
Subjt:  EKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHR

Query:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAE-ADQARADQAEADP
        DH H+T++   LK+E+E LIR GYL+E+  + +A Q  +  +   P+++     GGP   E A + +AD  EA P
Subjt:  DHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKD----DGGPPLAE-ADQARADQAEADP

A0A6J1DZ52 uncharacterized protein LOC1110256123.3e-2041.52Show/hide
Query:  EKYMSVEELLKSKRSELEHKR-HFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFH
        +KYMS EE    K+ ELE KR     +   +K    + E++ R    Q D  +KFEKYTPT++P EQ+LMEI++  LL  P  +K+ P+ R K +YC+FH
Subjt:  EKYMSVEELLKSKRSELEHKR-HFSSDHDNKKDKRKRTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFH

Query:  RDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKDD--------GGPPLAEADQAR
        RDHGH+T +C  LK+E+E LIR GYLKE+    +A      P R++ +K          GG    E+D+ R
Subjt:  RDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDDPSKDD--------GGPPLAEADQAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCGTAATTTGTCCATGATACTTCGTATCTTGGATAAACCAGGTTCTAGCACTAAAACCCATGATGAGAGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCCAT
GGAGCACAGTGTAGAATCAGGGACGAGATTAAAGGGAAATAAAACTGACAGCATGACCAGCAAGGTCAGGGGGCTCAGACCTACAGATCGTACAATTCTGAGGAGCCCAG
AACCAAGCACACTCAAGGTACATGACCACACAGTTTCAACACCAAGTTACAGCCATACCGGGACAGACCTAGGGAATCTGATCGAGGGGAAGCGCAGAAATGCCAAGGCT
GCCGAGGCCGAGGCCAGGGCTGCTAAAGCTGAAGCCAGGGCTGTCGAGGTCGAGGCTAGATTGGCCAAGGCCGAGGCCAAAAAGGACAATCTCCCTAGGAAGACCGAGCT
TCTGGACACGCAAAAAGAACTCGGAAATCCACAGGGAGACCTGCAGAAGTCAAAGGACCCAGGAGCTCGAGACTTGGAAGAACTGATCGACCAAGTTGACCCACCCTTCA
CAGAAGAAAAATACATGAGCGTAGAGGAGTTACTGAAGTCAAAGAGGTCAGAATTAGAGCACAAAAGACATTTTTCATCTGACCACGACAATAAAAAGGACAAGAGGAAG
CGAACAGAAGAAAGAGGTCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATACG
AAATACAAACCTGCTCAACGTGCCTAGAAAGTTGAAGTCAAATCCTGATAACAGAGACAAAAGCCAGTATTGTATCTTCCATCGAGATCATGGACATTCAACTAGGAACT
GCATTCAACTAAAGGACGAAATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACAAAGGCCGAGGCAAACCAGAGATGGTCGAGGCCGACCAGAGATGAC
CCAAGCAAAGATGATGGTGGACCTCCTCTAGCCGAGGCCGACCAGGCGAGGGCCGACCAGGCTGAGGCCGACCCCAAAACCTTGAAGAGTGGAGGATTAATGTTATGGGT
AATTTTGGACCACCATGATGTACAAGGAGCTGACAAGGACAACCGGGCGGAGATAGGACCAGGAAACGACCCAGAGGAAGACCAGACCAACGGGCCGGGCCAAGTTGGCC
CGACCCATATGGTCGGCTCGGCCCAAGGTCGAGGCCGACCACTCGACCCGCTTGCGCTGGCCGAGTTCGTTTGCCTCCGCTCGGTCCCTAATGCCTCTAGCCGCCCCAGT
TTCGCCTGGTTCGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGGATGAGCAGGTATTTATACCCCTCTTCGCCACTGAAGAAGGGGACACGAACTCTCGACTC
TCTCCTCTTACTCTCTTCCTCTCCTCTTCCCGCTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCGTAATTTGTCCATGATACTTCGTATCTTGGATAAACCAGGTTCTAGCACTAAAACCCATGATGAGAGGTTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCCAT
GGAGCACAGTGTAGAATCAGGGACGAGATTAAAGGGAAATAAAACTGACAGCATGACCAGCAAGGTCAGGGGGCTCAGACCTACAGATCGTACAATTCTGAGGAGCCCAG
AACCAAGCACACTCAAGGTACATGACCACACAGTTTCAACACCAAGTTACAGCCATACCGGGACAGACCTAGGGAATCTGATCGAGGGGAAGCGCAGAAATGCCAAGGCT
GCCGAGGCCGAGGCCAGGGCTGCTAAAGCTGAAGCCAGGGCTGTCGAGGTCGAGGCTAGATTGGCCAAGGCCGAGGCCAAAAAGGACAATCTCCCTAGGAAGACCGAGCT
TCTGGACACGCAAAAAGAACTCGGAAATCCACAGGGAGACCTGCAGAAGTCAAAGGACCCAGGAGCTCGAGACTTGGAAGAACTGATCGACCAAGTTGACCCACCCTTCA
CAGAAGAAAAATACATGAGCGTAGAGGAGTTACTGAAGTCAAAGAGGTCAGAATTAGAGCACAAAAGACATTTTTCATCTGACCACGACAATAAAAAGGACAAGAGGAAG
CGAACAGAAGAAAGAGGTCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTTGAAAAGTACACCCCTACTTCAATCCCACAGGAGCAGATCTTGATGGAGATACG
AAATACAAACCTGCTCAACGTGCCTAGAAAGTTGAAGTCAAATCCTGATAACAGAGACAAAAGCCAGTATTGTATCTTCCATCGAGATCATGGACATTCAACTAGGAACT
GCATTCAACTAAAGGACGAAATTGAAGCGCTGATTCGGAACGGATACCTGAAGGAGTTCACCACAAAGGCCGAGGCAAACCAGAGATGGTCGAGGCCGACCAGAGATGAC
CCAAGCAAAGATGATGGTGGACCTCCTCTAGCCGAGGCCGACCAGGCGAGGGCCGACCAGGCTGAGGCCGACCCCAAAACCTTGAAGAGTGGAGGATTAATGTTATGGGT
AATTTTGGACCACCATGATGTACAAGGAGCTGACAAGGACAACCGGGCGGAGATAGGACCAGGAAACGACCCAGAGGAAGACCAGACCAACGGGCCGGGCCAAGTTGGCC
CGACCCATATGGTCGGCTCGGCCCAAGGTCGAGGCCGACCACTCGACCCGCTTGCGCTGGCCGAGTTCGTTTGCCTCCGCTCGGTCCCTAATGCCTCTAGCCGCCCCAGT
TTCGCCTGGTTCGTCCCGAAACGCCTCCGAATTCCTAAAAACCCTAGGAGGATGAGCAGGTATTTATACCCCTCTTCGCCACTGAAGAAGGGGACACGAACTCTCGACTC
TCTCCTCTTACTCTCTTCCTCTCCTCTTCCCGCTTTCTGA
Protein sequenceShow/hide protein sequence
MDRNLSMILRILDKPGSSTKTHDERLVRDPRKGKEPMEHSVESGTRLKGNKTDSMTSKVRGLRPTDRTILRSPEPSTLKVHDHTVSTPSYSHTGTDLGNLIEGKRRNAKA
AEAEARAAKAEARAVEVEARLAKAEAKKDNLPRKTELLDTQKELGNPQGDLQKSKDPGARDLEELIDQVDPPFTEEKYMSVEELLKSKRSELEHKRHFSSDHDNKKDKRK
RTEERGRGRPDQGDYLKKFEKYTPTSIPQEQILMEIRNTNLLNVPRKLKSNPDNRDKSQYCIFHRDHGHSTRNCIQLKDEIEALIRNGYLKEFTTKAEANQRWSRPTRDD
PSKDDGGPPLAEADQARADQAEADPKTLKSGGLMLWVILDHHDVQGADKDNRAEIGPGNDPEEDQTNGPGQVGPTHMVGSAQGRGRPLDPLALAEFVCLRSVPNASSRPS
FAWFVPKRLRIPKNPRRMSRYLYPSSPLKKGTRTLDSLLLLSSSPLPAF