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Spg018374 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018374
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionagamous-like MADS-box protein AGL62
Genome locationscaffold3:10265476..10266741
RNA-Seq ExpressionSpg018374
SyntenySpg018374
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041553.1 agamous-like MADS-box protein AGL62 [Cucumis melo var. makuwa]2.1e-1656.18Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF D A+E EAEKK   +LI   ED RKN GF
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
KAG7013413.1 Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1550Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E YV +A FN DF DL +E EAEKK   +LI+  E+ R + GF  ++  EGL  
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--

Query:  ----EFRNSI
            EFR+S+
Subjt:  ----EFRNSI
XP_004147877.3 agamous-like MADS-box protein AGL62 [Cucumis sativus]6.0e-1655.06Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
        +S+ CGA+VAIIV  PN K+F F H D D+LLD +L   LS  KP E Y+ +A FN DF D A+E EAEKK   +LI   ED RKN GF
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
XP_008466532.1 PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]2.1e-1656.18Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF D A+E EAEKK   +LI   ED RKN GF
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
XP_023549141.1 agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo]2.3e-1549.09Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E YV +A FN DF DL +E EAEKK   +LI+  E+ R + GF  ++  EG+  
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--

Query:  ----EFRNSI
            EFR+S+
Subjt:  ----EFRNSI
TrEMBL top hitse value%identityAlignment
A0A0A0LE01 MADS-box domain-containing protein2.9e-1655.06Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
        +S+ CGA+VAIIV  PN K+F F H D D+LLD +L   LS  KP E Y+ +A FN DF D A+E EAEKK   +LI   ED RKN GF
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
A0A1S3CRI8 agamous-like MADS-box protein AGL621.0e-1656.18Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF D A+E EAEKK   +LI   ED RKN GF
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
A0A5D3D807 Agamous-like MADS-box protein AGL621.0e-1656.18Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E Y+ +A FN DF D A+E EAEKK   +LI   ED RKN GF
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGF
A0A6J1H4M6 agamous-like MADS-box protein AGL621.1e-1549.09Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--
        +S+ CGA+VAIIV  PN KVF F H D D+LLD +L   LS  KP E YV +A FN DF DL +E EAEKK   +LI+  E+ R + GF  ++  EG+  
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--

Query:  ----EFRNSI
            EFR+S+
Subjt:  ----EFRNSI
A0A6J1KVC9 agamous-like MADS-box protein AGL624.2e-1548.18Show/hide
Query:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--
        +S+ CGA+VAIIV  PN KVF F H + D+LLD +L   LS  KP E YV +A FN DF DL +E EAEKK   +LI+  E+ R + GF  ++  EG+  
Subjt:  VSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFRGKD--EGL--

Query:  ----EFRNSI
            EFR+S+
Subjt:  ----EFRNSI
SwissProt top hitse value%identityAlignment
O80807 Agamous-like MADS-box protein AGL235.0e-0538.03Show/hide
Query:  CGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPG--ERYVSM--ALFNCDFVDLAVELEAEKK
        C AK+A+IV  P GKVFSF H + D+LLDHF   ++  +     E Y  +   + N  + ++  E+E E+K
Subjt:  CGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPG--ERYVSM--ALFNCDFVDLAVELEAEKK
Arabidopsis top hitse value%identityAlignment
AT1G65360.1 AGAMOUS-like 233.5e-0638.03Show/hide
Query:  CGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPG--ERYVSM--ALFNCDFVDLAVELEAEKK
        C AK+A+IV  P GKVFSF H + D+LLDHF   ++  +     E Y  +   + N  + ++  E+E E+K
Subjt:  CGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPG--ERYVSM--ALFNCDFVDLAVELEAEKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTTGATAGGAAAAGTGTGGGAAAGAGGTGAGAAATTGACGGCGGTCAGAATCGGAGTCTCTATTTATTGCGGAGCAAAGGTTGCCATCATCGTCTTGTATCCCAA
CGGTAAGGTGTTTTCCTTCAGTCATTCTGACGATGATCTGCTTCTGGATCACTTTCTCATTGAAATCTTGTCGATGTCGAAGCCGGGTGAGAGATACGTCTCTATGGCGT
TGTTTAACTGCGATTTTGTCGATTTAGCGGTAGAACTGGAAGCAGAGAAGAAGCTAGAGACAAAGTTGATAGAGACGATGGAGGATTTCAGGAAGAACGAAGGATTCCGA
GGCAAAGATGAAGGATTGGAATTTCGTAATTCCATAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACATCT
AGAGACAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGAAATTCTCTGAGAGTAGGAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTTGATAGGAAAAGTGTGGGAAAGAGGTGAGAAATTGACGGCGGTCAGAATCGGAGTCTCTATTTATTGCGGAGCAAAGGTTGCCATCATCGTCTTGTATCCCAA
CGGTAAGGTGTTTTCCTTCAGTCATTCTGACGATGATCTGCTTCTGGATCACTTTCTCATTGAAATCTTGTCGATGTCGAAGCCGGGTGAGAGATACGTCTCTATGGCGT
TGTTTAACTGCGATTTTGTCGATTTAGCGGTAGAACTGGAAGCAGAGAAGAAGCTAGAGACAAAGTTGATAGAGACGATGGAGGATTTCAGGAAGAACGAAGGATTCCGA
GGCAAAGATGAAGGATTGGAATTTCGTAATTCCATAAAGCGGAAGCGTGATTGGGACCGATTCTGCGAACACCACCACTATGGCTACACCGGTATGACTCTGAGACATCT
AGAGACAGGAGACTGGTGGGAGTCTAGAGGAAGCCTTGAGGGAAATTCTCTGAGAGTAGGAGAATGA
Protein sequenceShow/hide protein sequence
MYLIGKVWERGEKLTAVRIGVSIYCGAKVAIIVLYPNGKVFSFSHSDDDLLLDHFLIEILSMSKPGERYVSMALFNCDFVDLAVELEAEKKLETKLIETMEDFRKNEGFR
GKDEGLEFRNSIKRKRDWDRFCEHHHYGYTGMTLRHLETGDWWESRGSLEGNSLRVGE