; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018383 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018383
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold3:14455863..14465729
RNA-Seq ExpressionSpg018383
SyntenySpg018383
Gene Ontology termsNA
InterPro domainsIPR011320 - Ribonuclease H1, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046928.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-1330.3Show/hide
Query:  FRVVNGGANKQQKHIWTRQEEA-RLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDIN
        FR+++G         W  ++ A  L +  + + H AAKGLLNK F HY++L++VFGKDRA+GG   +    AD    D  G     A+       PP  +
Subjt:  FRVVNGGANKQQKHIWTRQEEA-RLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDIN

Query:  LAVDMDFEDVPITPTSRPS-----TAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRI
          ++M  +D+  T T+R S     ++GS + R G    +  ++ DI+R ++   + Q  +IA+WP  Q     + R  +   L A  EL+  +R  LMRI
Subjt:  LAVDMDFEDVPITPTSRPS-----TAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRI

Query:  LFAKPKMTNMMLSVPPNLRLRFLRGLLNERR
        L          L VP +++  +   +L E +
Subjt:  LFAKPKMTNMMLSVPPNLRLRFLRGLLNERR

KAA0050190.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-1331.51Show/hide
Query:  KHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQ----DCYVPAPPDINLAVDMDFED
        KH+WT++E+  LVE LVELSH AAKGL NKPF +Y++LA+VFG DR   G           T +D   ++ V+ ++    D     P   +  +DM  ED
Subjt:  KHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQ----DCYVPAPPDINLAVDMDFED

Query:  VPITPTSRPSTAGSSQSR-KGSRALYEAE---ALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNM
        V     SRPS     + R  GS+   E++    ++++  ++   + Q   IA+WP    A +   R  +  +L    EL+  +RV   R L ++      
Subjt:  VPITPTSRPSTAGSSQSR-KGSRALYEAE---ALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNM

Query:  MLSVPPNLRLRFLRGLLNE
         + +  + R  F R LL +
Subjt:  MLSVPPNLRLRFLRGLLNE

KAA0064259.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-1333.79Show/hide
Query:  GANKQQKHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDF
        G N +QK I   +E   ++++ V+ SH+AAKGLLNK FSHY++L++VFGKDRA+GG     A         D G  N    +   V A P      D DF
Subjt:  GANKQQKHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDF

Query:  EDVPITPTSRPSTAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMML
        + + +       ++GS + RKG      A++ DI+R ++   + Q  +IA W   Q     + R  V   L A  EL+  +R  LMRIL          L
Subjt:  EDVPITPTSRPSTAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMML

Query:  SVPPNLRLRFLRGLLNERR
         VP N++  +   +L E R
Subjt:  SVPPNLRLRFLRGLLNERR

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-1332.39Show/hide
Query:  WTRQEEARLVESLV--ELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITP
        W  +++  + E  V  + SH AAKGLLNK F HY++L++VFGKDRA+GG        AD    D  G     A+       PP  +  ++M  +D+  T 
Subjt:  WTRQEEARLVESLV--ELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITP

Query:  TSRPSTAGS-SQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNL
        T+R S   + S   K  R  +  ++ DI+R ++   + Q  +IA+WP  Q     + R  +   L A  EL+  +R  LMRIL          L VP N+
Subjt:  TSRPSTAGS-SQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNL

Query:  RLRFLRGLLNERR
        +  +   +L E R
Subjt:  RLRFLRGLLNERR

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]5.1e-2136.98Show/hide
Query:  SHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITPTSRPSTAGSSQSRKGSRA
        SH  AKGL NKP  HY+DL   FGKDRA+G   + P + A S       D + +A QD Y+P PP  N   D   ED+P TPTS+P+   SS   K  R+
Subjt:  SHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITPTSRPSTAGSSQSRKGSRA

Query:  LYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNLRLRFLRGLLNE
         Y +E +D++R ++ MQ     K+A WP+ ++ ++  RR  V + L     L  ++ V L+ IL    K +   L VP   +  F   LL +
Subjt:  LYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNLRLRFLRGLLNE

TrEMBL top hitse value%identityAlignment
A0A5A7TVM3 Retrotransposon protein2.5e-1330.3Show/hide
Query:  FRVVNGGANKQQKHIWTRQEEA-RLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDIN
        FR+++G         W  ++ A  L +  + + H AAKGLLNK F HY++L++VFGKDRA+GG   +    AD    D  G     A+       PP  +
Subjt:  FRVVNGGANKQQKHIWTRQEEA-RLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDIN

Query:  LAVDMDFEDVPITPTSRPS-----TAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRI
          ++M  +D+  T T+R S     ++GS + R G    +  ++ DI+R ++   + Q  +IA+WP  Q     + R  +   L A  EL+  +R  LMRI
Subjt:  LAVDMDFEDVPITPTSRPS-----TAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRI

Query:  LFAKPKMTNMMLSVPPNLRLRFLRGLLNERR
        L          L VP +++  +   +L E +
Subjt:  LFAKPKMTNMMLSVPPNLRLRFLRGLLNERR

A0A5A7U4I8 Retrotransposon protein1.4e-1331.51Show/hide
Query:  KHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQ----DCYVPAPPDINLAVDMDFED
        KH+WT++E+  LVE LVELSH AAKGL NKPF +Y++LA+VFG DR   G           T +D   ++ V+ ++    D     P   +  +DM  ED
Subjt:  KHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQ----DCYVPAPPDINLAVDMDFED

Query:  VPITPTSRPSTAGSSQSR-KGSRALYEAE---ALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNM
        V     SRPS     + R  GS+   E++    ++++  ++   + Q   IA+WP    A +   R  +  +L    EL+  +RV   R L ++      
Subjt:  VPITPTSRPSTAGSSQSR-KGSRALYEAE---ALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNM

Query:  MLSVPPNLRLRFLRGLLNE
         + +  + R  F R LL +
Subjt:  MLSVPPNLRLRFLRGLLNE

A0A5A7VF53 Retrotransposon protein1.9e-1332.39Show/hide
Query:  WTRQEEARLVESLV--ELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITP
        W  +++  + E  V  + SH AAKGLLNK F HY++L++VFGKDRA+GG        AD    D  G     A+       PP  +  ++M  +D+  T 
Subjt:  WTRQEEARLVESLV--ELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITP

Query:  TSRPSTAGS-SQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNL
        T+R S   + S   K  R  +  ++ DI+R ++   + Q  +IA+WP  Q     + R  +   L A  EL+  +R  LMRIL          L VP N+
Subjt:  TSRPSTAGS-SQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNL

Query:  RLRFLRGLLNERR
        +  +   +L E R
Subjt:  RLRFLRGLLNERR

A0A5A7VFF1 Retrotransposon protein1.9e-1333.79Show/hide
Query:  GANKQQKHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDF
        G N +QK I   +E   ++++ V+ SH+AAKGLLNK FSHY++L++VFGKDRA+GG     A         D G  N    +   V A P      D DF
Subjt:  GANKQQKHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDF

Query:  EDVPITPTSRPSTAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMML
        + + +       ++GS + RKG      A++ DI+R ++   + Q  +IA W   Q     + R  V   L A  EL+  +R  LMRIL          L
Subjt:  EDVPITPTSRPSTAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMML

Query:  SVPPNLRLRFLRGLLNERR
         VP N++  +   +L E R
Subjt:  SVPPNLRLRFLRGLLNERR

A0A6J1DW73 uncharacterized protein LOC1110250182.4e-2136.98Show/hide
Query:  SHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITPTSRPSTAGSSQSRKGSRA
        SH  AKGL NKP  HY+DL   FGKDRA+G   + P + A S       D + +A QD Y+P PP  N   D   ED+P TPTS+P+   SS   K  R+
Subjt:  SHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQAEQDCYVPAPPDINLAVDMDFEDVPITPTSRPSTAGSSQSRKGSRA

Query:  LYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNLRLRFLRGLLNE
         Y +E +D++R ++ MQ     K+A WP+ ++ ++  RR  V + L     L  ++ V L+ IL    K +   L VP   +  F   LL +
Subjt:  LYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILFAKPKMTNMMLSVPPNLRLRFLRGLLNE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATCGGTATCCGCCTGGTAGATTGGGGCACGGTGACGGGTGGGACGAAGGTAAGGGACAAGTAAACCAGTTTAA
GGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTACGTTGCGGGCACCCGGGGCGAAGCAAACCTCGTTGACCAACATGATGCGT
GTCGTAACCTTCCTGTAGGGGGCTATGGAACCGTAGGAAACTGTTACAGTATTAGTCGGATGTTGTTCATTAGAGGAGCGCTGTCCCACAACTACGTTCCTAATCTCAGA
GTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCGTTGAAGTATTCAGAGTCGTCAACGGAGGTGCAAATAAACAACAGAA
ACACATCTGGACGAGGCAAGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCTCACACTCGGCTGCAAAGGGGCTGCTGAACAAGCCATTTTCTCATTACGAGGATC
TTGCTTTCGTGTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGGAACAGGCAGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCG
GAACAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCCGTGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTC
CCAGAGTCGAAAGGGGAGCAGAGCTTTATATGAAGCTGAAGCCCTTGATATTATGAGGCAGTCAGTGACTATGCAGGACACACAGTTCACTAAGATCGCTGACTGGCCGG
AAGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACTGTCGGAGAGATGCTCATGGCGCAGCACGAGCTATCGGACGATGAGAGAGTTGCTCTTATGCGCATCCTCTTC
GCCAAACCGAAGATGACAAATATGATGTTGTCTGTGCCACCGAACCTCAGGCTTCGCTTTCTACGAGGACTACTGAACGAACGCCGGGTTGATCTTTATGTTCCTAATGT
TTATGGAATCAATCGACTTACAAATGTCAATGAAATCAGTCCACGAAGTTTCTGCACGATCTACGACCGAATGGCATCAATTGTGACAGATGAAGTGGATGAGGATATGT
CTGACACGAGCAGTAAAATCGGGCCAGAATATGCATCATCAGCAAGGAGTAGTAGGAGACATTGTTCCTACAAGAGAGAGATAATTGAGGTCATAAAGGATGCAATGGAC
AGTCAAATTACCAGTCTTCAGAGAATCTCATCGTGGCCGGAACGAAAGAGCGAACGGGACGCTGCACGCCGTAAGTTGGTAGTCGAGGACATAGAAGAAATGGCATACTT
TGATGAACGAGATAAAACTCAACTTCTCAAAGTGCTGCTCGCTGATATGCATCAAATCGAGACTTTCCTATCAATGCCCATGTCTTTGAGAAAAATACATTGCATGCATC
TTCTTGGAAGGAATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCTTCAACTTGTCGTGGGTGTCGACGATATGAATCGGTATCCGCCTGGTAGATTGGGGCACGGTGACGGGTGGGACGAAGGTAAGGGACAAGTAAACCAGTTTAA
GGGAGCACTACACAAGTCATATCCAACATTTCAAGAAGCAGAGTATGCATTTAGGCATTACGTTGCGGGCACCCGGGGCGAAGCAAACCTCGTTGACCAACATGATGCGT
GTCGTAACCTTCCTGTAGGGGGCTATGGAACCGTAGGAAACTGTTACAGTATTAGTCGGATGTTGTTCATTAGAGGAGCGCTGTCCCACAACTACGTTCCTAATCTCAGA
GTTATAGCGGGGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAAGAATCATTCGTTGAAGTATTCAGAGTCGTCAACGGAGGTGCAAATAAACAACAGAA
ACACATCTGGACGAGGCAAGAGGAGGCAAGGTTGGTGGAATCCCTCGTGGAGCTCTCACACTCGGCTGCAAAGGGGCTGCTGAACAAGCCATTTTCTCATTACGAGGATC
TTGCTTTCGTGTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGGAACAGGCAGACAGCACCCACGAGGACGACGAGGGTGATCAGAATGTCCAGGCG
GAACAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCCGTGGACATGGACTTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTC
CCAGAGTCGAAAGGGGAGCAGAGCTTTATATGAAGCTGAAGCCCTTGATATTATGAGGCAGTCAGTGACTATGCAGGACACACAGTTCACTAAGATCGCTGACTGGCCGG
AAGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACTGTCGGAGAGATGCTCATGGCGCAGCACGAGCTATCGGACGATGAGAGAGTTGCTCTTATGCGCATCCTCTTC
GCCAAACCGAAGATGACAAATATGATGTTGTCTGTGCCACCGAACCTCAGGCTTCGCTTTCTACGAGGACTACTGAACGAACGCCGGGTTGATCTTTATGTTCCTAATGT
TTATGGAATCAATCGACTTACAAATGTCAATGAAATCAGTCCACGAAGTTTCTGCACGATCTACGACCGAATGGCATCAATTGTGACAGATGAAGTGGATGAGGATATGT
CTGACACGAGCAGTAAAATCGGGCCAGAATATGCATCATCAGCAAGGAGTAGTAGGAGACATTGTTCCTACAAGAGAGAGATAATTGAGGTCATAAAGGATGCAATGGAC
AGTCAAATTACCAGTCTTCAGAGAATCTCATCGTGGCCGGAACGAAAGAGCGAACGGGACGCTGCACGCCGTAAGTTGGTAGTCGAGGACATAGAAGAAATGGCATACTT
TGATGAACGAGATAAAACTCAACTTCTCAAAGTGCTGCTCGCTGATATGCATCAAATCGAGACTTTCCTATCAATGCCCATGTCTTTGAGAAAAATACATTGCATGCATC
TTCTTGGAAGGAATGAATGA
Protein sequenceShow/hide protein sequence
MPLQLVVGVDDMNRYPPGRLGHGDGWDEGKGQVNQFKGALHKSYPTFQEAEYAFRHYVAGTRGEANLVDQHDACRNLPVGGYGTVGNCYSISRMLFIRGALSHNYVPNLR
VIAGKIKWWCSSLLQSNQESFVEVFRVVNGGANKQQKHIWTRQEEARLVESLVELSHSAAKGLLNKPFSHYEDLAFVFGKDRASGGACNVPAEQADSTHEDDEGDQNVQA
EQDCYVPAPPDINLAVDMDFEDVPITPTSRPSTAGSSQSRKGSRALYEAEALDIMRQSVTMQDTQFTKIADWPEAQDAREFKRRDTVGEMLMAQHELSDDERVALMRILF
AKPKMTNMMLSVPPNLRLRFLRGLLNERRVDLYVPNVYGINRLTNVNEISPRSFCTIYDRMASIVTDEVDEDMSDTSSKIGPEYASSARSSRRHCSYKREIIEVIKDAMD
SQITSLQRISSWPERKSERDAARRKLVVEDIEEMAYFDERDKTQLLKVLLADMHQIETFLSMPMSLRKIHCMHLLGRNE