; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018391 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018391
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:19763717..19766378
RNA-Seq ExpressionSpg018391
SyntenySpg018391
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.7e-2368.09Show/hide
Query:  VPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLA
        +PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK A
Subjt:  VPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLA

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.9e-2262.73Show/hide
Query:  VPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDV
        +PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDV
Subjt:  VPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDV

Query:  CWLHAVFRAK
        CWLHAVFRAK
Subjt:  CWLHAVFRAK

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]4.3e-2260.91Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAK
        CWLHAVFRAK
Subjt:  CWLHAVFRAK

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]5.9e-2465.14Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAK
        WLHAVFRAK
Subjt:  WLHAVFRAK

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]4.3e-2260.91Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAK
        CWLHAVFRAK
Subjt:  CWLHAVFRAK

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein8.4e-2468.09Show/hide
Query:  VPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLA
        +PRGNR +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTWLELY ESV  +  F    +V V       GS GIVRGDD+CWLHAVF AK A
Subjt:  VPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRF----NVSV-------GSTGIVRGDDVCWLHAVFRAKLA

A0A5A7UT17 CCHC-type domain-containing protein9.2e-2362.73Show/hide
Query:  VPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDV
        +PRGNR SLQT ELDKT               V IELPVPD LPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDV
Subjt:  VPRGNRSSLQTGELDKT---------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDV

Query:  CWLHAVFRAK
        CWLHAVFRAK
Subjt:  CWLHAVFRAK

A0A5A7V9N3 Reverse transcriptase2.1e-2260.91Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAK
        CWLHAVFRAK
Subjt:  CWLHAVFRAK

A0A5D3CJX3 CCHC-type domain-containing protein2.9e-2465.14Show/hide
Query:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC
        PRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SSTWLELY ESV      +F  +        FNVSVGSTGIVRGDDVC
Subjt:  PRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSSTWLELYIESV------TFQTR--------FNVSVGSTGIVRGDDVC

Query:  WLHAVFRAK
        WLHAVFRAK
Subjt:  WLHAVFRAK

A0A5D3DSY7 Putative Retrotransposon protein2.1e-2260.91Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV
        RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SSTWLELY ESV                   F+V VGSTGIVRGDDV
Subjt:  RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESV--------------TFQTRFNVSVGSTGIVRGDDV

Query:  CWLHAVFRAK
        CWLHAVFRAK
Subjt:  CWLHAVFRAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAA
GACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCC
AAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGTGGATCATGAACCACCA
CAAGGTCTTCCTTGCTATTCTCAGGCCTTGGCACGGATTGTGGGGATCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGCTTTAGGAGTAAAATTGAATGTCTTAAGTGCTTTCGATCTTCAATTGCTTCCGCATGTGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAA
GACTGTAGAGATCGAGCTCCCGGTGCCTGATACATTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACTTTCC
AAACCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGTGGATCATGAACCACCA
CAAGGTCTTCCTTGCTATTCTCAGGCCTTGGCACGGATTGTGGGGATCCTCTAG
Protein sequenceShow/hide protein sequence
MHALGVKLNVLSAFDLQLLPHVPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESVTFQTRFNVSVGSTGIVRGDDVCWLHAVFRAKLAVDHEPP
QGLPCYSQALARIVGIL