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Spg018400 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018400
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA ligase
Genome locationscaffold3:6248827..6251502
RNA-Seq ExpressionSpg018400
SyntenySpg018400
Gene Ontology termsGO:0006266 - DNA ligation (biological process)
GO:0006273 - lagging strand elongation (biological process)
GO:0006281 - DNA repair (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003910 - DNA ligase (ATP) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR012310 - DNA ligase, ATP-dependent, central


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064109.1 DNA ligase 1 isoform X3 [Cucumis melo var. makuwa]9.8e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

TYK28629.1 DNA ligase 1 isoform X3 [Cucumis melo var. makuwa]9.8e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

XP_008444061.1 PREDICTED: DNA ligase 1 isoform X1 [Cucumis melo]9.8e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

XP_008444063.1 PREDICTED: DNA ligase 1 isoform X3 [Cucumis melo]9.8e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

XP_008444064.1 PREDICTED: DNA ligase 1 isoform X4 [Cucumis melo]9.8e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

TrEMBL top hitse value%identityAlignment
A0A1S3B921 DNA ligase4.7e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

A0A1S3B9K2 DNA ligase4.7e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

A0A1S3BAB3 DNA ligase4.7e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

A0A5A7VEZ9 DNA ligase4.7e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

A0A5D3DZ11 DNA ligase 1 isoform X34.7e-4990.48Show/hide
Query:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
        YLKDLFGD +LGYFEYAKEI+IE+DDA LNCESTLIK+N FLGDAF SSCEGIMVKSLDVDAGY PSKR+DTWLKVKRDYLEGLNDSLDLVPIGAWHGNG
Subjt:  YLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNG

Query:  RKAGW
        RKAGW
Subjt:  RKAGW

SwissProt top hitse value%identityAlignment
F4HPZ9 DNA ligase 62.1e-3869.23Show/hide
Query:  LKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGR
        LK++F + + GY EYAKEIT+  ++A LN   TL ++N FL +AFQSSCEGIMVKSLDV+AGY P+KRSD+WLKVKRDY++GL D+LDLVPIGAW+GNGR
Subjt:  LKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGR

Query:  KAGW
        KAGW
Subjt:  KAGW

P18858 DNA ligase 13.9e-1655.88Show/hide
Query:  KVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG
        ++  FL  + + SCEG+MVK+LDVDA Y  +KRS  WLK+K+DYL+G+ D+LDLV IGA+ G G++AG
Subjt:  KVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG

P37913 DNA ligase 13.9e-1655.88Show/hide
Query:  KVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG
        ++  FL  + + SCEG+MVK+LDVDA Y  +KRS  WLK+K+DYL+G+ D+LDLV IGA+ G G++AG
Subjt:  KVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG

Q42572 DNA ligase 19.3e-1841.24Show/hide
Query:  DEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG
        +E  GYF++A  +T    D          ++  FL  +    CEG+++K+LD DA Y P+KRS+ WLK+K+DY++ + DS+DLVPI A+HG G++ G
Subjt:  DEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG

Q869E1 DNA ligase 12.7e-1744.09Show/hide
Query:  GYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG
        G F +AK   I          S +  + ++L +A + +CEG+MVK+L   + Y PS+RS  WLK+K+DY++G+ DSLDLVPIGAW+G G++ G
Subjt:  GYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG

Arabidopsis top hitse value%identityAlignment
AT1G08130.1 DNA ligase 16.6e-1941.24Show/hide
Query:  DEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG
        +E  GYF++A  +T    D          ++  FL  +    CEG+++K+LD DA Y P+KRS+ WLK+K+DY++ + DS+DLVPI A+HG G++ G
Subjt:  DEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAG

AT1G49250.1 ATP-dependent DNA ligase5.6e-1840.38Show/hide
Query:  LKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGR
        L D F +E LGYF++A  +T           + + ++  FL  +    CEG+M+KSL  +A Y P+KRS+ WLK+K+DY++ + DS+DLVPI  +HG G+
Subjt:  LKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGR

Query:  KAGW
        + G+
Subjt:  KAGW

AT1G66730.1 DNA LIGASE 61.5e-3969.23Show/hide
Query:  LKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGR
        LK++F + + GY EYAKEIT+  ++A LN   TL ++N FL +AFQSSCEGIMVKSLDV+AGY P+KRSD+WLKVKRDY++GL D+LDLVPIGAW+GNGR
Subjt:  LKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIKVNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGR

Query:  KAGW
        KAGW
Subjt:  KAGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCGTGGAAGACTCCGAAACGGCGGTGGGAGAGGTCGCCGGTGAATGGGTCGTCGGGAGATGGGCTCGCCGGAGAATGGGTCGTCAGGAGCACAAACAGTACGCT
AGCAGATGCGACCCACTCCTCAACGAACGAACATCATTCTGCAAACTTCGAGACCTGCAAGTACGCTACTCCGACGGTTTCAGCGGCGAGACCCATGGCGTCTAGCCTCT
ACTTGAAGGATTTGTTTGGTGATGAGAAGCTAGGATATTTTGAATATGCGAAAGAAATTACAATTGAACAGGACGATGCCTACTTAAACTGTGAATCCACTTTGATTAAG
GTAAATACTTTCCTTGGAGATGCATTCCAATCATCGTGTGAAGGAATTATGGTCAAATCTTTAGATGTAGATGCTGGATATTCTCCCTCAAAGCGTAGTGATACATGGTT
AAAGGTAAAACGGGATTATCTTGAAGGGTTGAATGATTCTCTTGATTTAGTTCCTATCGGTGCTTGGCATGGAAATGGAAGAAAAGCCGGATGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATCGTGGAAGACTCCGAAACGGCGGTGGGAGAGGTCGCCGGTGAATGGGTCGTCGGGAGATGGGCTCGCCGGAGAATGGGTCGTCAGGAGCACAAACAGTACGCT
AGCAGATGCGACCCACTCCTCAACGAACGAACATCATTCTGCAAACTTCGAGACCTGCAAGTACGCTACTCCGACGGTTTCAGCGGCGAGACCCATGGCGTCTAGCCTCT
ACTTGAAGGATTTGTTTGGTGATGAGAAGCTAGGATATTTTGAATATGCGAAAGAAATTACAATTGAACAGGACGATGCCTACTTAAACTGTGAATCCACTTTGATTAAG
GTAAATACTTTCCTTGGAGATGCATTCCAATCATCGTGTGAAGGAATTATGGTCAAATCTTTAGATGTAGATGCTGGATATTCTCCCTCAAAGCGTAGTGATACATGGTT
AAAGGTAAAACGGGATTATCTTGAAGGGTTGAATGATTCTCTTGATTTAGTTCCTATCGGTGCTTGGCATGGAAATGGAAGAAAAGCCGGATGGTAG
Protein sequenceShow/hide protein sequence
MESWKTPKRRWERSPVNGSSGDGLAGEWVVRSTNSTLADATHSSTNEHHSANFETCKYATPTVSAARPMASSLYLKDLFGDEKLGYFEYAKEITIEQDDAYLNCESTLIK
VNTFLGDAFQSSCEGIMVKSLDVDAGYSPSKRSDTWLKVKRDYLEGLNDSLDLVPIGAWHGNGRKAGW