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Spg018405 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018405
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:8693668..8698145
RNA-Seq ExpressionSpg018405
SyntenySpg018405
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.7e-1743.97Show/hide
Query:  RPRGNRLGLQTRKLAKT-----------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEED
        RPRGNR  LQT +L KT                 VEIEL V DTLPTSAESS + SSTW+EL  E VH+             ++++FNV  G    +  D
Subjt:  RPRGNRLGLQTRKLAKT-----------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEED

Query:  DVRWLHAIFRAKLAGGLGGGVTNPRHTSQEDHETDKMDERT
        +V WLHA+F AK AGG GGGV  PR + +     D+M + T
Subjt:  DVRWLHAIFRAKLAGGLGGGVTNPRHTSQEDHETDKMDERT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.9e-1949.59Show/hide
Query:  SFRPRGNRLGLQTRKLAKTVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGLG
        S  PRGNR  L T KL KTVEIEL V DTLPTSAESS++ SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK AG  G
Subjt:  SFRPRGNRLGLQTRKLAKTVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGLG

Query:  GGVTNPRHTSQEDHETDKMDERT
        GGV  PR + +     D M   T
Subjt:  GGVTNPRHTSQEDHETDKMDERT

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.2e-1750.42Show/hide
Query:  PRGNRLGLQTRKLAKT---------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNRL LQTR+L KT               V IEL V D LPTSAESS + SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRLGLQTRKLAKT---------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGLGGGVT
        WLHA+FRAK  GG GGGVT
Subjt:  WLHAIFRAKLAGGLGGGVT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.5e-1848.41Show/hide
Query:  PRGNRLGLQTRKLAKTV---------------EIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNRL LQT +L KTV                IEL V DTLPTSAESS + SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRLGLQTRKLAKTV---------------EIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGLGGGVTNPRHTSQ
        WLHA+FRAK  GG GGGVT    ++Q
Subjt:  WLHAIFRAKLAGGLGGGVTNPRHTSQ

TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]6.2e-1746.51Show/hide
Query:  PRGNRLGLQTRKLAK-----------------TVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRW
        PRGNR GLQT +L K                  VEIEL + DTLPTSAESS + SSTW+ELY ESVH+  + +   + +  S          +  DDV W
Subjt:  PRGNRLGLQTRKLAK-----------------TVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRW

Query:  LHAIFRAKLAGGLGGGVTNPRHTSQEDHE
        LHAIFRAK AGG GGGVT  +  S+   E
Subjt:  LHAIFRAKLAGGLGGGVTNPRHTSQEDHE

TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein3.0e-1746.51Show/hide
Query:  PRGNRLGLQTRKLAK-----------------TVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRW
        PRGNR GLQT +L K                  VEIEL + DTLPTSAESS + SSTW+ELY ESVH+  + +   + +  S          +  DDV W
Subjt:  PRGNRLGLQTRKLAK-----------------TVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQEGQRVS----------LEEDDVRW

Query:  LHAIFRAKLAGGLGGGVTNPRHTSQEDHE
        LHAIFRAK AGG GGGVT  +  S+   E
Subjt:  LHAIFRAKLAGGLGGGVTNPRHTSQEDHE

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.3e-1743.97Show/hide
Query:  RPRGNRLGLQTRKLAKT-----------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEED
        RPRGNR  LQT +L KT                 VEIEL V DTLPTSAESS + SSTW+EL  E VH+             ++++FNV  G    +  D
Subjt:  RPRGNRLGLQTRKLAKT-----------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEED

Query:  DVRWLHAIFRAKLAGGLGGGVTNPRHTSQEDHETDKMDERT
        +V WLHA+F AK AGG GGGV  PR + +     D+M + T
Subjt:  DVRWLHAIFRAKLAGGLGGGVTNPRHTSQEDHETDKMDERT

A0A5A7UAH6 CCHC-type domain-containing protein1.9e-1949.59Show/hide
Query:  SFRPRGNRLGLQTRKLAKTVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGLG
        S  PRGNR  L T KL KTVEIEL V DTLPTSAESS++ SSTW+ELY ESVH+  + +             EG    +  DD+ WLHA+F AK AG  G
Subjt:  SFRPRGNRLGLQTRKLAKTVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGLG

Query:  GGVTNPRHTSQEDHETDKMDERT
        GGV  PR + +     D M   T
Subjt:  GGVTNPRHTSQEDHETDKMDERT

A0A5A7UT17 CCHC-type domain-containing protein6.0e-1850.42Show/hide
Query:  PRGNRLGLQTRKLAKT---------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNRL LQTR+L KT               V IEL V D LPTSAESS + SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRLGLQTRKLAKT---------------VEIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGLGGGVT
        WLHA+FRAK  GG GGGVT
Subjt:  WLHAIFRAKLAGGLGGGVT

A0A5D3CJX3 CCHC-type domain-containing protein4.6e-1848.41Show/hide
Query:  PRGNRLGLQTRKLAKTV---------------EIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNRL LQT +L KTV                IEL V DTLPTSAESS + SSTW+ELY ESVH+             ++++FNV  G    +  DDV 
Subjt:  PRGNRLGLQTRKLAKTV---------------EIELSVLDTLPTSAESSRTRSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGLGGGVTNPRHTSQ
        WLHA+FRAK  GG GGGVT    ++Q
Subjt:  WLHAIFRAKLAGGLGGGVTNPRHTSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATTCCACTCTTGGGGAAGAGATCATTTCTCATTACCATCATTGGGAGCCGAATAGAGGAGGAAGATTGGAGATTACAAGAAAACCATCAATTACGAAGTTGATCAA
GGGAATTGGTGTGAGTTTGGTGCATGAGCGATCCGCCTGGGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTAAAGAAGATA
GGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATCAACCTGTCAACCTCTGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGG
GGCAATTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTCATTCAGGCCAAGAGGAAATAGGTTGGGTCTACAAACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCT
CTCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACACGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTTCATATTGTAAATGTTTTGTTCAACG
TTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAAACCCAAGG
CACACATCCCAAGAAGATCACGAGACAGACAAGATGGATGAAAGGACAGCGCTGACACAACTGACGCAACTAATGCAAGTGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATTCCACTCTTGGGGAAGAGATCATTTCTCATTACCATCATTGGGAGCCGAATAGAGGAGGAAGATTGGAGATTACAAGAAAACCATCAATTACGAAGTTGATCAA
GGGAATTGGTGTGAGTTTGGTGCATGAGCGATCCGCCTGGGAGCACTTGAGGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTAAAGAAGATA
GGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGATCAACCTGTCAACCTCTGGAGAAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGG
GGCAATTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTCATTCAGGCCAAGAGGAAATAGGTTGGGTCTACAAACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCT
CTCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACACGCTCCAGTACGTGGGTGGAGTTGTATATCGAGTCTGTTCATATTGTAAATGTTTTGTTCAACG
TTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACAAACCCAAGG
CACACATCCCAAGAAGATCACGAGACAGACAAGATGGATGAAAGGACAGCGCTGACACAACTGACGCAACTAATGCAAGTGGGCTAA
Protein sequenceShow/hide protein sequence
MHSTLGEEIISHYHHWEPNRGGRLEITRKPSITKLIKGIGVSLVHERSAWEHLRERVKEEEEEEFRGFEVKEDRKSSCKASHSRIWDQPVNLWRKIKGSREPRICVVCVR
GNSGQIGWESRFHSFRPRGNRLGLQTRKLAKTVEIELSVLDTLPTSAESSRTRSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGLGGGVTNPR
HTSQEDHETDKMDERTALTQLTQLMQVG