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Spg018408 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018408
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold3:19262959..19263231
RNA-Seq ExpressionSpg018408
SyntenySpg018408
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038679.1 hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa]9.7e-0543.55Show/hide
Query:  NFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEE
        N DASW +     G  W++RDS+G+ I ASC+R   KWP++ LE  A  +GL  Y    G E
Subjt:  NFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEE

KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]3.6e-0736.84Show/hide
Query:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYL-----TAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE
        +N  ASW   + KGGV W++ DS GS I   CK + +KW +K LE +A+I+GL +YL      +       F  L  I ++++  + EL+  VDE
Subjt:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYL-----TAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]8.2e-0435.56Show/hide
Query:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE
        +N +A+W  ++  GG+GWILRD  G +I ASC+ I  +  I  LEV AI +GL +             P + ++SDS + I  L+R+  +
Subjt:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]8.2e-0435.16Show/hide
Query:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFH-PLLEIKSDSNDVIQELNREVDE
        +N DA+W  ++  GG+GWILRD  G +I A C+ I  +  I  LEV AI +GL +            H   + ++SDS + I  L+R+  +
Subjt:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFH-PLLEIKSDSNDVIQELNREVDE

TrEMBL top hitse value%identityAlignment
A0A5D3E6P6 RNase H domain-containing protein4.7e-0543.55Show/hide
Query:  NFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEE
        N DASW +     G  W++RDS+G+ I ASC+R   KWP++ LE  A  +GL  Y    G E
Subjt:  NFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEE

A0A6J1CP26 uncharacterized protein LOC1110134124.0e-0435.56Show/hide
Query:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE
        +N +A+W  ++  GG+GWILRD  G +I ASC+ I  +  I  LEV AI +GL +             P + ++SDS + I  L+R+  +
Subjt:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE

A0A6J1DSV1 uncharacterized protein LOC1110236084.0e-0435.16Show/hide
Query:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFH-PLLEIKSDSNDVIQELNREVDE
        +N DA+W  ++  GG+GWILRD  G +I A C+ I  +  I  LEV AI +GL +            H   + ++SDS + I  L+R+  +
Subjt:  MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFH-PLLEIKSDSNDVIQELNREVDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTTGACGCTTCGTGGTGCAACAATTCGTTAAAAGGGGGAGTAGGTTGGATCTTACGTGACTCGAGTGGGTCTTTGATCGATGCTAGTTGCAAACGAATTAATAA
AAAATGGCCCATAAAATCATTGGAAGTGAGAGCGATTATCAAAGGTTTAAGCTCTTACCTGACAGCCGCAGGCGAAGAGGGCAGTTTCTTCCATCCTCTGTTGGAGATCA
AATCAGACTCCAATGATGTCATTCAGGAGCTAAATCGTGAAGTTGATGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTTGACGCTTCGTGGTGCAACAATTCGTTAAAAGGGGGAGTAGGTTGGATCTTACGTGACTCGAGTGGGTCTTTGATCGATGCTAGTTGCAAACGAATTAATAA
AAAATGGCCCATAAAATCATTGGAAGTGAGAGCGATTATCAAAGGTTTAAGCTCTTACCTGACAGCCGCAGGCGAAGAGGGCAGTTTCTTCCATCCTCTGTTGGAGATCA
AATCAGACTCCAATGATGTCATTCAGGAGCTAAATCGTGAAGTTGATGAGTAA
Protein sequenceShow/hide protein sequence
MNFDASWCNNSLKGGVGWILRDSSGSLIDASCKRINKKWPIKSLEVRAIIKGLSSYLTAAGEEGSFFHPLLEIKSDSNDVIQELNREVDE