; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018414 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018414
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold3:18057563..18066572
RNA-Seq ExpressionSpg018414
SyntenySpg018414
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035918.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-0638Show/hide
Query:  LVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTT---VHLQ
        ++K NP+ +             P  ++++VM+T   T E +M E+ + +N LMK +EE+D +I  LK+ IE+   AESS TQ +KN DKGKT    +HL+
Subjt:  LVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTT---VHLQ

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.6e-0647.83Show/hide
Query:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK
        P  ++++VM+T+  T E++MAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T  IKN +KGK
Subjt:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK

KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-0749.28Show/hide
Query:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK
        P  ++++VM+T+  T E++MAE+++ +N LMKA+EEKD +I  LK+ IE++  AESS T  IKN +KGK
Subjt:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0748.61Show/hide
Query:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV
        P  ++++VM+T+  T E +MAE+++ +N LMKA+EE+D +I  LK+ IE+   AESS T  IKN DKGKT +
Subjt:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV

TYK25824.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.6e-0737.74Show/hide
Query:  DKFLVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV-HL
        D  ++K NP+ +             P  +++ VM+T+  T +++MAE+++ IN L+KA++E+D +I  LK+ IE++   ESS T  IKN DKGKT +   
Subjt:  DKFLVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV-HL

Query:  QVLNLT
        Q  NLT
Subjt:  QVLNLT

TrEMBL top hitse value%identityAlignment
A0A5A7SZB7 Ty3-gypsy retrotransposon protein6.1e-0738Show/hide
Query:  LVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTT---VHLQ
        ++K NP+ +             P  ++++VM+T   T E +M E+ + +N LMK +EE+D +I  LK+ IE+   AESS TQ +KN DKGKT    +HL+
Subjt:  LVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTT---VHLQ

A0A5A7TZU9 Ribonuclease H7.9e-0747.83Show/hide
Query:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK
        P  ++++VM+T+  T E++MAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T  IKN +KGK
Subjt:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK

A0A5A7U5H1 Ty3-gypsy retrotransposon protein3.6e-0749.28Show/hide
Query:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK
        P  ++++VM+T+  T E++MAE+++ +N LMKA+EEKD +I  LK+ IE++  AESS T  IKN +KGK
Subjt:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGK

A0A5D3C857 Ty3-gypsy retrotransposon protein1.2e-0748.61Show/hide
Query:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV
        P  ++++VM+T+  T E +MAE+++ +N LMKA+EE+D +I  LK+ IE+   AESS T  IKN DKGKT +
Subjt:  PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV

A0A5D3DQH9 Ty3-gypsy retrotransposon protein4.6e-0737.74Show/hide
Query:  DKFLVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV-HL
        D  ++K NP+ +             P  +++ VM+T+  T +++MAE+++ IN L+KA++E+D +I  LK+ IE++   ESS T  IKN DKGKT +   
Subjt:  DKFLVKYNPLFE-------------PDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDSQIVQLKSQIENQHIAESSQTQVIKNHDKGKTTV-HL

Query:  QVLNLT
        Q  NLT
Subjt:  QVLNLT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCTTCGCTGAGGTTTCTTCTCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGAAATTCATTCTCTCCAAGTTTGAAGGTTCTCCACTGCACTGTTGTGCTGCTTC
CTTCTCCAACTTCAAGGTTGTCAAGTGCTACGTTGTTTCGAATTTCCTTCTCTCCAAGTTCGAAGCTAAAGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAG
ATCGTGACGGGGACGTGTCGCGTCGCGACGCTGTCGCCAGATTTTCTATAAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATT
TCGACTAGAGACCTTTGGTGGGAGCTAAAGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACAGGACGACACTCGTTTTACACGAAAAC
ACTATATTATTACTTGACCCGTACACTTGCGGTTAGCAATTTGCGCATCATTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTATGTTATACGCTACTGTGTTG
TTCTTTCTCCAAGTTTGAAGGTTCTCACATTGTGCTGTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTCCCCACGTTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGA
AGGTTCTCAAGTGCTACGCTGTTGCGATGCTTCCTTCTCCAAGATCGAAGGTTCCCACGTTGCACTGTTGTGCTGCTTCCTTCTCCAACTTCAAGGTTGTCAAGTGCTAC
TCTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTTCCCATGTTGCACTGTTGTGCTGCTTCCTTCTCCAACTTCAAGTTCGAGGGTTCTTACGTTATACGCTACTGCGTTG
TTCTTTCTCCAAGTTTGAAGGTTCTCCGCTGCACGCTCCTGCGTTGCTCCTTCTCCAAGTCTGAAGGTTTGCACGTGTTGTTATGTTGCTTCGCTGCTGTTCCTTTTCCA
AGTTCGAAGGTTCTCAGGTTGCGCTGTTGCGCTACTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGCTATGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGCTGC
GCTGCTTCCTTCTCCAAGTTCGAAGGTACTCATGTCACGCTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGACGCTGCGCTGCTTCCTTCTCCAAGTTC
GAAGGTTCCCACGTTGCACTGTTGTGCTACTTCCTTCTCCAAGTTCGGAGGTTCTCAAGTGTTACGTTGTTTCGCTGTTGCTTCCTTCTCCAAGTTTGAAGGTGTCGTTG
TATGCTGCTTCGCTGCTATTTCTTCTCCAAGTTCGAAGCAGTAAAGGAGCCCAAGTGGGAGTGACATCATGTGTCCTTGGACCGGGGAACGTCGTAGCAACAAAAGTCCA
AAGACACGTTGCCAGTAGAGGAGCCCAAGTGGGAGTGACATCATGTGTCCTTGGGTCGGGGAACGTCGTAGCAACAAAAGCCCAAAGACGTATATTGCCCTTCAGTAAAG
GAGTCCAAGTGGGAGTGACATCATGTGTCCTTGGGTCGGGGAACGTCCAAGCAACAAAAGTACGAGGAACATGTCCTTGTACTAATGTTGAAAGACGTGGCAGCGGTAAA
GGAGCCCAAGTGGGAATGACATCATGTGTCCTTGGGCCGAAGAGCGTCGTAGCAACAAAAGTCCAAAGACGTCATATTTCTATTGCCCATTGTTACTTCAATGAACTGAC
GATGCAAGAAGATACAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGTGTATACTAATGACAAGTTTCTTGTCAAGTATAACCCTTTATTTGAACCTGATT
CTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAAAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCT
CAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGATAAAGGAAAGACTACAGTGCACCTCCAAGT
TCTAAATTTGACTCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGCTTCGCTGAGGTTTCTTCTCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGAAATTCATTCTCTCCAAGTTTGAAGGTTCTCCACTGCACTGTTGTGCTGCTTC
CTTCTCCAACTTCAAGGTTGTCAAGTGCTACGTTGTTTCGAATTTCCTTCTCTCCAAGTTCGAAGCTAAAGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAG
ATCGTGACGGGGACGTGTCGCGTCGCGACGCTGTCGCCAGATTTTCTATAAATTCATCTTTTCATGCTACGGCCAAGGGGAGTCCAATTGGTGAGATTTTAGCCCTAATT
TCGACTAGAGACCTTTGGTGGGAGCTAAAGCAAGGCCAAGGAGCGGGAATCAAGCGAGAAGACGTGGAGATCGTGACGGGGACAGGACGACACTCGTTTTACACGAAAAC
ACTATATTATTACTTGACCCGTACACTTGCGGTTAGCAATTTGCGCATCATTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTTCTTATGTTATACGCTACTGTGTTG
TTCTTTCTCCAAGTTTGAAGGTTCTCACATTGTGCTGTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTCCCCACGTTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGA
AGGTTCTCAAGTGCTACGCTGTTGCGATGCTTCCTTCTCCAAGATCGAAGGTTCCCACGTTGCACTGTTGTGCTGCTTCCTTCTCCAACTTCAAGGTTGTCAAGTGCTAC
TCTTGCGTTGCTTCCTTCTCCAAGTTCGAAGGTTCCCATGTTGCACTGTTGTGCTGCTTCCTTCTCCAACTTCAAGTTCGAGGGTTCTTACGTTATACGCTACTGCGTTG
TTCTTTCTCCAAGTTTGAAGGTTCTCCGCTGCACGCTCCTGCGTTGCTCCTTCTCCAAGTCTGAAGGTTTGCACGTGTTGTTATGTTGCTTCGCTGCTGTTCCTTTTCCA
AGTTCGAAGGTTCTCAGGTTGCGCTGTTGCGCTACTTCTTTAAGTTCGAAGGTTCCCACATTGCGCTGCTATGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTGACGCTGC
GCTGCTTCCTTCTCCAAGTTCGAAGGTACTCATGTCACGCTGCTTCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCATACTGACGCTGCGCTGCTTCCTTCTCCAAGTTC
GAAGGTTCCCACGTTGCACTGTTGTGCTACTTCCTTCTCCAAGTTCGGAGGTTCTCAAGTGTTACGTTGTTTCGCTGTTGCTTCCTTCTCCAAGTTTGAAGGTGTCGTTG
TATGCTGCTTCGCTGCTATTTCTTCTCCAAGTTCGAAGCAGTAAAGGAGCCCAAGTGGGAGTGACATCATGTGTCCTTGGACCGGGGAACGTCGTAGCAACAAAAGTCCA
AAGACACGTTGCCAGTAGAGGAGCCCAAGTGGGAGTGACATCATGTGTCCTTGGGTCGGGGAACGTCGTAGCAACAAAAGCCCAAAGACGTATATTGCCCTTCAGTAAAG
GAGTCCAAGTGGGAGTGACATCATGTGTCCTTGGGTCGGGGAACGTCCAAGCAACAAAAGTACGAGGAACATGTCCTTGTACTAATGTTGAAAGACGTGGCAGCGGTAAA
GGAGCCCAAGTGGGAATGACATCATGTGTCCTTGGGCCGAAGAGCGTCGTAGCAACAAAAGTCCAAAGACGTCATATTTCTATTGCCCATTGTTACTTCAATGAACTGAC
GATGCAAGAAGATACAGCTTCTATCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGTGTATACTAATGACAAGTTTCTTGTCAAGTATAACCCTTTATTTGAACCTGATT
CTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAAAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCT
CAAATCGTGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGATAAAGGAAAGACTACAGTGCACCTCCAAGT
TCTAAATTTGACTCTTTAG
Protein sequenceShow/hide protein sequence
MRFAEVSSLQIRRFSRVSLKFILSKFEGSPLHCCAASFSNFKVVKCYVVSNFLLSKFEAKARPRSGNQARRRGDRDGDVSRRDAVARFSINSSFHATAKGSPIGEILALI
STRDLWWELKQGQGAGIKREDVEIVTGTGRHSFYTKTLYYYLTRTLAVSNLRIISLQFLLSKFEGSYVIRYCVVLSPSLKVLTLCCCVASFSKFEGPHVALLCCFLLQVR
RFSSATLLRCFLLQDRRFPRCTVVLLPSPTSRLSSATLALLPSPSSKVPMLHCCAASFSNFKFEGSYVIRYCVVLSPSLKVLRCTLLRCSFSKSEGLHVLLCCFAAVPFP
SSKVLRLRCCATSLSSKVPTLRCYAASFSKFEGSDAALLPSPSSKVLMSRCFVVPSPSSKVLILTLRCFLLQVRRFPRCTVVLLPSPSSEVLKCYVVSLLLPSPSLKVSL
YAASLLFLLQVRSSKGAQVGVTSCVLGPGNVVATKVQRHVASRGAQVGVTSCVLGSGNVVATKAQRRILPFSKGVQVGVTSCVLGSGNVQATKVRGTCPCTNVERRGSGK
GAQVGMTSCVLGPKSVVATKVQRRHISIAHCYFNELTMQEDTASIVAGQETTLQGVYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEEKMAEMQEHINTLMKAIEEKDS
QIVQLKSQIENQHIAESSQTQVIKNHDKGKTTVHLQVLNLTL