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Spg018415 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018415
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:5924988..5925775
RNA-Seq ExpressionSpg018415
SyntenySpg018415
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1448.84Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT  ESSRS+SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGG
                 DDV WLHAIFR K AGG GG
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGG

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.3e-1268.33Show/hide
Query:  YIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        YI LLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]8.1e-2459.5Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPT  ESS S+S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGG
         DDV WLH +FR K  GG GG
Subjt:  EDDVRWLHAIFRTKLAGGLGG

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]8.1e-2459.5Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPT  ESS S+S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGG
         DDV WLH +FR K  GG GG
Subjt:  EDDVRWLHAIFRTKLAGGLGG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.5e-1448.84Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT  ESSRS+SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGG
                 DDV WLHAIFR K AGG GG
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase7.4e-1548.84Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT  ESSRS+SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGG
                 DDV WLHAIFR K AGG GG
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGG

A0A5A7TCY8 DNA/RNA polymerases superfamily protein4.5e-1268.33Show/hide
Query:  YIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE
        YI LLTLSVLRDN+ VV            SAGR PLHRRTSKRWLYWACPTQR  VMLV+
Subjt:  YIPLLTLSVLRDNDAVV------------SAGRAPLHRRTSKRWLYWACPTQRRSVMLVE

A0A5A7VGQ5 Uncharacterized protein3.9e-2459.5Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPT  ESS S+S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGG
         DDV WLH +FR K  GG GG
Subjt:  EDDVRWLHAIFRTKLAGGLGG

A0A5D3BG85 Uncharacterized protein3.9e-2459.5Show/hide
Query:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE
        L TLSVLRDNDAVVSAG            RAPLHRRTSKRWLYWACPT RRSVML          VEIEL VPDTLPT  ESS S+S S         + 
Subjt:  LLTLSVLRDNDAVVSAG------------RAPLHRRTSKRWLYWACPTQRRSVML----------VEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLE

Query:  EDDVRWLHAIFRTKLAGGLGG
         DDV WLH +FR K  GG GG
Subjt:  EDDVRWLHAIFRTKLAGGLGG

A0A5D3BTP3 Reverse transcriptase7.4e-1548.84Show/hide
Query:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------
        PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPT  ESSRS+SS+  +   E   V +               
Subjt:  PLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPT----QRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQ---EGQRVSL---------------

Query:  -------EEDDVRWLHAIFRTKLAGGLGG
                 DDV WLHAIFR K AGG GG
Subjt:  -------EEDDVRWLHAIFRTKLAGGLGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTG
CCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCGGATACACTGCCAACGTTTGATGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAAG
AGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGG
mRNA sequenceShow/hide mRNA sequence
TATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTG
CCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGGTGCCGGATACACTGCCAACGTTTGATGAAAGTTCCAGATCAAGCTCCAGTTCTACGTTTCAAG
AGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGG
Protein sequenceShow/hide protein sequence
YIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWACPTQRRSVMLVEIELPVPDTLPTFDESSRSSSSSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGLGG