; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg018433 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018433
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold3:20510977..20514874
RNA-Seq ExpressionSpg018433
SyntenySpg018433
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1643.24Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------
        L TLSVL DNDAV+SAG+APLRQRRWEC  GP                   +    KM     VEIELPVPD LPTSAESS       + L         
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------

Query:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS
                                DDV WLHAIF+ K AGG GGGVT+
Subjt:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS

KAA0041324.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-1167.21Show/hide
Query:  GYILLLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVK
        GYI LLTLSVLRDN+ V+S  R PL +        PLHRRTSKRWLYWACPTQ   VMLVK
Subjt:  GYILLLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVK

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]2.9e-2761.16Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW
        L TLSVLRDNDAV+SAG     +        PLHRRTSKRWLYWACPT  RSVMLVK  DVL   VEIEL VPDTLPTSAESS         +  DDV W
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW

Query:  LHAIFQTKLAGGLGGGVTSDP
        LH +F+ K  GG GG VT  P
Subjt:  LHAIFQTKLAGGLGGGVTSDP

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]2.9e-2761.16Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW
        L TLSVLRDNDAV+SAG     +        PLHRRTSKRWLYWACPT  RSVMLVK  DVL   VEIEL VPDTLPTSAESS         +  DDV W
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW

Query:  LHAIFQTKLAGGLGGGVTSDP
        LH +F+ K  GG GG VT  P
Subjt:  LHAIFQTKLAGGLGGGVTSDP

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-1643.24Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------
        L TLSVL DNDAV+SAG+APLRQRRWEC  GP                   +    KM     VEIELPVPD LPTSAESS       + L         
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------

Query:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS
                                DDV WLHAIF+ K AGG GGGVT+
Subjt:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase8.6e-1743.24Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------
        L TLSVL DNDAV+SAG+APLRQRRWEC  GP                   +    KM     VEIELPVPD LPTSAESS       + L         
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------

Query:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS
                                DDV WLHAIF+ K AGG GGGVT+
Subjt:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS

A0A5A7TCY8 DNA/RNA polymerases superfamily protein6.4e-1267.21Show/hide
Query:  GYILLLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVK
        GYI LLTLSVLRDN+ V+S  R PL +        PLHRRTSKRWLYWACPTQ   VMLVK
Subjt:  GYILLLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVK

A0A5A7VGQ5 Uncharacterized protein1.4e-2761.16Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW
        L TLSVLRDNDAV+SAG     +        PLHRRTSKRWLYWACPT  RSVMLVK  DVL   VEIEL VPDTLPTSAESS         +  DDV W
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW

Query:  LHAIFQTKLAGGLGGGVTSDP
        LH +F+ K  GG GG VT  P
Subjt:  LHAIFQTKLAGGLGGGVTSDP

A0A5D3BG85 Uncharacterized protein1.4e-2761.16Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW
        L TLSVLRDNDAV+SAG     +        PLHRRTSKRWLYWACPT  RSVMLVK  DVL   VEIEL VPDTLPTSAESS         +  DDV W
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVL--DVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRW

Query:  LHAIFQTKLAGGLGGGVTSDP
        LH +F+ K  GG GG VT  P
Subjt:  LHAIFQTKLAGGLGGGVTSDP

A0A5D3BTP3 Reverse transcriptase8.6e-1743.24Show/hide
Query:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------
        L TLSVL DNDAV+SAG+APLRQRRWEC  GP                   +    KM     VEIELPVPD LPTSAESS       + L         
Subjt:  LLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSKRWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSL---------

Query:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS
                                DDV WLHAIF+ K AGG GGGVT+
Subjt:  ----------------------EEDDVRWLHAIFQTKLAGGLGGGVTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAACCCCACCACCGCCTAAGCCAACTCCTACCCATTTTCAGCCCACTTCCAGCCACATTCCTCATCATTTTTCATCCAAATTATCAGAGCACTTGAGGGA
GAGAGTGAAATCACAGGATTTTCGGGCAAAGCAAAAGGATCTCTGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTCAGGTTATATTCTGTTGTTGA
CGTTGAGTGTACTCCGTGACAACGATGCAGTCATGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCACTACATCGTAGGACTAGTAAA
CGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGATCGGTCATGTTAGTTAAAATGCTTGATGTACTTGATGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAAC
GTCTGCTGAAAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAAACTAAGCTAGCAGGTGGTCTGGGAG
GGGGTGTGACATCTGATCCCCTTTATCTACTATTTTTAACAACAGAGGAGAACTGGAAATTCCTAGAAATGCGACCGCATTTCTGGGAAGGCAAAAGTGAAATGCGACCG
CATTTCTTGGCAGATAGAGGCAGTTTCGAGACCGTCGCGGGTCGTTTTGAACGAGAGTTTCACGCACCTAACCGGTTGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAACCCCACCACCGCCTAAGCCAACTCCTACCCATTTTCAGCCCACTTCCAGCCACATTCCTCATCATTTTTCATCCAAATTATCAGAGCACTTGAGGGA
GAGAGTGAAATCACAGGATTTTCGGGCAAAGCAAAAGGATCTCTGGGCATTTCTGGACAAATTGGTTGGGAATCCCGTTTTCATTTCTTCAGGTTATATTCTGTTGTTGA
CGTTGAGTGTACTCCGTGACAACGATGCAGTCATGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCACTACATCGTAGGACTAGTAAA
CGTTGGTTGTACTGGGCGTGCCCTACACAATGTAGATCGGTCATGTTAGTTAAAATGCTTGATGTACTTGATGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAAC
GTCTGCTGAAAGTTCAACGTTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAAACTAAGCTAGCAGGTGGTCTGGGAG
GGGGTGTGACATCTGATCCCCTTTATCTACTATTTTTAACAACAGAGGAGAACTGGAAATTCCTAGAAATGCGACCGCATTTCTGGGAAGGCAAAAGTGAAATGCGACCG
CATTTCTTGGCAGATAGAGGCAGTTTCGAGACCGTCGCGGGTCGTTTTGAACGAGAGTTTCACGCACCTAACCGGTTGTTTTAA
Protein sequenceShow/hide protein sequence
MDSTTPPPPKPTPTHFQPTSSHIPHHFSSKLSEHLRERVKSQDFRAKQKDLWAFLDKLVGNPVFISSGYILLLTLSVLRDNDAVMSAGRAPLRQRRWECWAGPLHRRTSK
RWLYWACPTQCRSVMLVKMLDVLDVEIELPVPDTLPTSAESSTFQEGQRVSLEEDDVRWLHAIFQTKLAGGLGGGVTSDPLYLLFLTTEENWKFLEMRPHFWEGKSEMRP
HFLADRGSFETVAGRFEREFHAPNRLF