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Spg018439 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg018439
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationscaffold3:14596695..14599597
RNA-Seq ExpressionSpg018439
SyntenySpg018439
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037251.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1229.25Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD
        PRGNR SLQT +L KT                 VEIELP+ D LPTSAES  ++SS+  +                             EG    +  DD
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD

Query:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------
        V W HA+FQ K  GG  GGV                     GS P                                                       
Subjt:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------

Query:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR
                               EL+ Y + IV SES                                          +EKSAME SRG  T SG +GR
Subjt:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR

Query:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        EQ RFTPGVN SG QDFKRRSGG+  RQMSSGSAY
Subjt:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

KAA0041109.1 hypothetical protein E6C27_scaffold128G00120 [Cucumis melo var. makuwa]1.4e-1261.43Show/hide
Query:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        +L E    + +S ++EKSA+E SRG  TASGF+GREQWRFTPG+N S RQDFK RSGGQ SR +S GS +
Subjt:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.0e-1536.36Show/hide
Query:  EIELPMPDTLPTSAESSKTSSSSTFQEGQRVSLEEDDVRWFHAIFQTKLAGGLGGGV---------------------GSVP------------------
        EIELP+PDTL TSAESS ++S S         +  DDV W HAIF+ K+ GG GGGV                     GS P                  
Subjt:  EIELPMPDTLPTSAESSKTSSSSTFQEGQRVSLEEDDVRWFHAIFQTKLAGGLGGGV---------------------GSVP------------------

Query:  -------------------------------------------------IELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQ
                                                          +L E    + +S  +EKSAME SRG  T SG +GREQ RFTPGV+ SG Q
Subjt:  -------------------------------------------------IELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQ

Query:  DFKRRSGGQLSRQMSSGSAY
        DFKRRSGG+  RQMSSGSAY
Subjt:  DFKRRSGGQLSRQMSSGSAY

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1229.25Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD
        PRGNR SLQT +L KT                 VEIELP+ D LPTSAES  ++SS+  +                             EG    +  DD
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD

Query:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------
        V W HA+FQ K  GG  GGV                     GS P                                                       
Subjt:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------

Query:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR
                               EL+ Y + IV SES                                          +EKSAME SRG  T SG +GR
Subjt:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR

Query:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        EQ RFTPGVN SG QDFKRRSGG+  RQMSSGSAY
Subjt:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

TYK14494.1 uncharacterized protein E5676_scaffold15G00050 [Cucumis melo var. makuwa]6.3e-1365.71Show/hide
Query:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        +L E    + +S  +EKS ME SRG  T SG +GREQWRFTPGVN SG QDFKRRSGG+  RQMSSGSAY
Subjt:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

TrEMBL top hitse value%identityAlignment
A0A5A7T6M8 DNA/RNA polymerases superfamily protein5.2e-1329.25Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD
        PRGNR SLQT +L KT                 VEIELP+ D LPTSAES  ++SS+  +                             EG    +  DD
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD

Query:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------
        V W HA+FQ K  GG  GGV                     GS P                                                       
Subjt:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------

Query:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR
                               EL+ Y + IV SES                                          +EKSAME SRG  T SG +GR
Subjt:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR

Query:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        EQ RFTPGVN SG QDFKRRSGG+  RQMSSGSAY
Subjt:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

A0A5A7TIG0 Reverse transcriptase6.8e-1361.43Show/hide
Query:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        +L E    + +S ++EKSA+E SRG  TASGF+GREQWRFTPG+N S RQDFK RSGGQ SR +S GS +
Subjt:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

A0A5D3BNX1 Zf-CCHC domain-containing protein5.0e-1636.36Show/hide
Query:  EIELPMPDTLPTSAESSKTSSSSTFQEGQRVSLEEDDVRWFHAIFQTKLAGGLGGGV---------------------GSVP------------------
        EIELP+PDTL TSAESS ++S S         +  DDV W HAIF+ K+ GG GGGV                     GS P                  
Subjt:  EIELPMPDTLPTSAESSKTSSSSTFQEGQRVSLEEDDVRWFHAIFQTKLAGGLGGGV---------------------GSVP------------------

Query:  -------------------------------------------------IELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQ
                                                          +L E    + +S  +EKSAME SRG  T SG +GREQ RFTPGV+ SG Q
Subjt:  -------------------------------------------------IELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQ

Query:  DFKRRSGGQLSRQMSSGSAY
        DFKRRSGG+  RQMSSGSAY
Subjt:  DFKRRSGGQLSRQMSSGSAY

A0A5D3C867 DNA/RNA polymerases superfamily protein5.2e-1329.25Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD
        PRGNR SLQT +L KT                 VEIELP+ D LPTSAES  ++SS+  +                             EG    +  DD
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPMPDTLPTSAESSKTSSSSTFQ-----------------------------EGQRVSLEEDD

Query:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------
        V W HA+FQ K  GG  GGV                     GS P                                                       
Subjt:  VRWFHAIFQTKLAGGLGGGV---------------------GSVP-------------------------------------------------------

Query:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR
                               EL+ Y + IV SES                                          +EKSAME SRG  T SG +GR
Subjt:  ----------------------IELAEYGQSIVESES------------------------------------------KEKSAMEPSRGAPTASGFQGR

Query:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        EQ RFTPGVN SG QDFKRRSGG+  RQMSSGSAY
Subjt:  EQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

A0A5D3CU23 Retrotrans_gag domain-containing protein3.0e-1365.71Show/hide
Query:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY
        +L E    + +S  +EKS ME SRG  T SG +GREQWRFTPGVN SG QDFKRRSGG+  RQMSSGSAY
Subjt:  ELAEYGQSIVESESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGT
AGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAAACAAGCTCCAGTTCAACATTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACG
ATGTTCGTTGGTTTCACGCCATCTTCCAGACTAAGCTAGCAGGTGGTCTGGGAGGGGGCGTTGGGTCAGTTCCGATAGAACTAGCAGAGTACGGTCAAAGTATTGTTGAG
AGTGAGTCCAAGGAAAAGTCGGCAATGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCAAGGTCGTGAGCAGTGGAGGTTCACACCTGGAGTGAATGCTTCAGG
CCGTCAAGACTTCAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGGTAGTGCTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGT
AGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAAACAAGCTCCAGTTCAACATTCCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACG
ATGTTCGTTGGTTTCACGCCATCTTCCAGACTAAGCTAGCAGGTGGTCTGGGAGGGGGCGTTGGGTCAGTTCCGATAGAACTAGCAGAGTACGGTCAAAGTATTGTTGAG
AGTGAGTCCAAGGAAAAGTCGGCAATGGAGCCTAGTCGTGGAGCTCCAACAGCTAGTGGTTTCCAAGGTCGTGAGCAGTGGAGGTTCACACCTGGAGTGAATGCTTCAGG
CCGTCAAGACTTCAAGCGCCGATCTGGTGGCCAGTTGTCGAGGCAGATGAGTTCGGGTAGTGCTTATTAG
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWPRGNRSSLQTRKLAKTVEIELPMPDTLPTSAESSKTSSSSTFQEGQRVSLEEDDVRWFHAIFQTKLAGGLGGGVGSVPIELAEYGQSIVE
SESKEKSAMEPSRGAPTASGFQGREQWRFTPGVNASGRQDFKRRSGGQLSRQMSSGSAY